• Version:
  • 10.5 (archived version)
STRINGSTRING
NMB1018 NMB1018 avtA avtA pglA pglA pglC pglC fmt fmt pglD pglD pglB pglB hldD hldD NMB0063 NMB0063 rfbB1 rfbB1 NMB0809 NMB0809
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pglCPilin glycosylation protein (391 aa)    
Predicted Functional Partners:
pglD
Pilin glycosylation protein (636 aa)
 
 
  0.993
pglB
Pilin glycosylation protein PglB (413 aa)
 
  0.992
rfbB1
dTDP-D-glucose 4,6-dehydratase; Catalyzes the dehydration of dTDP-D-glucose to form dTDP-6-deoxy-D-xylo-4-hexulose via a three-step process involving oxidation, dehydration and reduction (355 aa)
   
 
  0.842
NMB0063
dTDP-D-glucose 4,6-dehydratase (355 aa)
   
 
  0.842
hldD
ADP-L-glycero-D-manno-heptose-6-epimerase; Catalyzes the interconversion between ADP-D-glycero- beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose (334 aa)
   
 
  0.834
NMB0809
Hypothetical protein (265 aa)
   
 
  0.834
fmt
methionyl-tRNA formyltransferase; Modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by- (I) promoting its recognition by IF2 and (II) impairing its binding to EFTu-GTP (308 aa)
   
 
  0.832
pglA
Glycosyltransferase (376 aa)
 
     
  0.829
avtA
Valine--pyruvate transaminase (430 aa)
         
  0.826
NMB1018
Hypothetical protein (160 aa)
 
 
  0.764
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: Diplokokkus intracellularis meningitidis, Micrococcus intracellularis, Micrococcus meningitidis, Micrococcus meningitidis cerebrospinalis, N. meningitidis, N. meningitidis MC58, N. meningitidis serogroup B, Neisseria meningitidis, Neisseria meningitidis (group B), Neisseria meningitidis (serogroup B), Neisseria meningitidis MC58, Neisseria meningitidis group B, Neisseria meningitidis serogroup B, Neisseria meningitidis serogroup B strain MC58, Neisseria weichselbaumii
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