ptp protein (Halobacterium sp. NRC1) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

ptp

Polysaccharide biosynthesis protein (475 aa)

Predicted Functional Partners:

graD4

0.960

gtl

0.956

exoM

0.912

dpg

0.892

VNG_1066C

0.889

rfbQ

0.889

udg1

0.866

lpb

0.746

VNG_1058H

0.722

VNG_1065C

0.719

Your Current Organism:

Halobacterium sp. NRC1

NCBI taxonomy Id: 64091
Other names: Bacillus halobius ruber, Bacterium halobium, Flavobacterium (subgen. Halobacterium), Flavobacterium (subgen. Halobacterium) halobium, Flavobacterium (subgen. Halobacterium) salinarium, H. salinarum, H. sp. NRC-1, Haloarchaeum, Halobacter, Halobacter salinaria, Halobacterium, Halobacterium NRC_1, Halobacterium cutirubrum, Halobacterium halobium, Halobacterium salinarium, Halobacterium salinarum, Halobacterium salinarum NRC-1, Halobacterium salinarum str. NRC-1, Halobacterium salinarum strain NRC-1, Halobacterium sp. (strain NRC-1 / ATCC 700922 / JCM 11081), Halobacterium sp. (strain NRC-1), Halobacterium sp. ATCC 700922, Halobacterium sp. JCM 11081, Halobacterium sp. NRC-1, Halobacterium sp. NRC1, Pseudomonas salinaria, Serratia cutirubrum, Serratia salinaria

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VNG_1058H	VNG_1065C	VNG1058H	VNG1065C	Hypothetical protein	Hypothetical protein	0.712
VNG_1058H	VNG_1066C	VNG1058H	VNG1066C	Hypothetical protein	Hypothetical protein	0.707
VNG_1058H	dpg	VNG1058H	VNG0318G	Hypothetical protein	dolichol-P-glucose synthetase	0.706
VNG_1058H	exoM	VNG1058H	VNG1067G	Hypothetical protein	Succinoglycan biosynthesis protein	0.707
VNG_1058H	graD4	VNG1058H	VNG1055G	Hypothetical protein	Glucose-1-phosphate thymidylyltransferase	0.707
VNG_1058H	gtl	VNG1058H	VNG1053G	Hypothetical protein	Glycosyl transferase-like protein	0.705
VNG_1058H	ptp	VNG1058H	VNG1054G	Hypothetical protein	Polysaccharide biosynthesis protein	0.722
VNG_1058H	rfbQ	VNG1058H	VNG1062G	Hypothetical protein	Rhamnosyl transferase	0.705
VNG_1058H	udg1	VNG1058H	VNG1048G	Hypothetical protein	UDP-glucose dehydrogenase	0.680
VNG_1065C	VNG_1058H	VNG1065C	VNG1058H	Hypothetical protein	Hypothetical protein	0.712
VNG_1065C	VNG_1066C	VNG1065C	VNG1066C	Hypothetical protein	Hypothetical protein	0.959
VNG_1065C	dpg	VNG1065C	VNG0318G	Hypothetical protein	dolichol-P-glucose synthetase	0.785
VNG_1065C	exoM	VNG1065C	VNG1067G	Hypothetical protein	Succinoglycan biosynthesis protein	0.755
VNG_1065C	graD4	VNG1065C	VNG1055G	Hypothetical protein	Glucose-1-phosphate thymidylyltransferase	0.747
VNG_1065C	gtl	VNG1065C	VNG1053G	Hypothetical protein	Glycosyl transferase-like protein	0.721
VNG_1065C	ptp	VNG1065C	VNG1054G	Hypothetical protein	Polysaccharide biosynthesis protein	0.719
VNG_1065C	rfbQ	VNG1065C	VNG1062G	Hypothetical protein	Rhamnosyl transferase	0.723
VNG_1065C	udg1	VNG1065C	VNG1048G	Hypothetical protein	UDP-glucose dehydrogenase	0.674
VNG_1066C	VNG_1058H	VNG1066C	VNG1058H	Hypothetical protein	Hypothetical protein	0.707
VNG_1066C	VNG_1065C	VNG1066C	VNG1065C	Hypothetical protein	Hypothetical protein	0.959

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