• Version:
  • 10.5 (archived version)
STRINGSTRING
Saci_0619 Saci_0619 mpg1 mpg1 Saci_1706 Saci_1706 Saci_2310 Saci_2310 Saci_1927 Saci_1927 Saci_1926 Saci_1926 Saci_0423 Saci_0423 Saci_1705 Saci_1705 Saci_1199 Saci_1199 Saci_2366 Saci_2366 Saci_1259 Saci_1259
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saci_0423Epimerase (393 aa)    
Predicted Functional Partners:
Saci_0619
Nucleotidyl transferase (405 aa)
   
 
  0.941
Saci_1706
dTDP-4-dehydrorhamnose 3,5-epimerase (184 aa)
   
  0.894
Saci_2366
Hypothetical protein (356 aa)
   
 
  0.862
Saci_1259
Nucleotidyl transferase (231 aa)
   
 
  0.862
Saci_1199
Glucose-1-phosphate adenylyltransferase (417 aa)
   
 
  0.862
mpg1
Mannose-1-phosphate guanyltransferase (359 aa)
   
 
  0.862
Saci_2310
Hypothetical protein (236 aa)
   
  0.860
Saci_1705
dTDP-4-dehydrorhamnose reductase (282 aa)
   
  0.860
Saci_1927
Hypothetical protein (132 aa)
   
 
  0.853
Saci_1926
Hypothetical protein (185 aa)
   
 
  0.853
Your Current Organism:
Sulfolobus acidocaldarius
NCBI taxonomy Id: 330779
Other names: S. acidocaldarius, S. acidocaldarius DSM 639, Sulfolobus acidocaldarius, Sulfolobus acidocaldarius ATCC 33909, Sulfolobus acidocaldarius DSM 639, Sulfolobus acidocaldarius NCIB 11770
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