udg1 protein (Halobacterium sp. NRC1) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

udg1

UDP-glucose dehydrogenase (426 aa)

Predicted Functional Partners:

galE2

0.989

galE1

0.987

gmd

0.987

graD4

0.951

VNG_0405C

0.883

VNG_0267H

0.883

VNG_0128C

0.883

VNG_0073C

0.883

VNG_1066C

0.879

dpg

0.879

Your Current Organism:

Halobacterium sp. NRC1

NCBI taxonomy Id: 64091
Other names: Bacillus halobius ruber, Bacterium halobium, Flavobacterium (subgen. Halobacterium), Flavobacterium (subgen. Halobacterium) halobium, Flavobacterium (subgen. Halobacterium) salinarium, H. salinarum, H. sp. NRC-1, Haloarchaeum, Halobacter, Halobacter salinaria, Halobacterium, Halobacterium NRC_1, Halobacterium cutirubrum, Halobacterium halobium, Halobacterium salinarium, Halobacterium salinarum, Halobacterium salinarum NRC-1, Halobacterium salinarum str. NRC-1, Halobacterium salinarum strain NRC-1, Halobacterium sp. (strain NRC-1 / ATCC 700922 / JCM 11081), Halobacterium sp. (strain NRC-1), Halobacterium sp. ATCC 700922, Halobacterium sp. JCM 11081, Halobacterium sp. NRC-1, Halobacterium sp. NRC1, Pseudomonas salinaria, Serratia cutirubrum, Serratia salinaria

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VNG_0073C	VNG_1066C	VNG0073C	VNG1066C	Hypothetical protein	Hypothetical protein	0.885
VNG_0073C	dpg	VNG0073C	VNG0318G	Hypothetical protein	dolichol-P-glucose synthetase	0.885
VNG_0073C	graD4	VNG0073C	VNG1055G	Hypothetical protein	Glucose-1-phosphate thymidylyltransferase	0.864
VNG_0073C	udg1	VNG0073C	VNG1048G	Hypothetical protein	UDP-glucose dehydrogenase	0.883
VNG_0128C	VNG_1066C	VNG0128C	VNG1066C	Hypothetical protein; Catalyzes the NAD-dependent oxidation of glucose 6- phosphate to 6-phosphogluconolactone	Hypothetical protein	0.885
VNG_0128C	dpg	VNG0128C	VNG0318G	Hypothetical protein; Catalyzes the NAD-dependent oxidation of glucose 6- phosphate to 6-phosphogluconolactone	dolichol-P-glucose synthetase	0.885
VNG_0128C	graD4	VNG0128C	VNG1055G	Hypothetical protein; Catalyzes the NAD-dependent oxidation of glucose 6- phosphate to 6-phosphogluconolactone	Glucose-1-phosphate thymidylyltransferase	0.864
VNG_0128C	udg1	VNG0128C	VNG1048G	Hypothetical protein; Catalyzes the NAD-dependent oxidation of glucose 6- phosphate to 6-phosphogluconolactone	UDP-glucose dehydrogenase	0.883
VNG_0267H	VNG_1066C	VNG0267H	VNG1066C	Hypothetical protein	Hypothetical protein	0.885
VNG_0267H	dpg	VNG0267H	VNG0318G	Hypothetical protein	dolichol-P-glucose synthetase	0.885
VNG_0267H	graD4	VNG0267H	VNG1055G	Hypothetical protein	Glucose-1-phosphate thymidylyltransferase	0.864
VNG_0267H	udg1	VNG0267H	VNG1048G	Hypothetical protein	UDP-glucose dehydrogenase	0.883
VNG_0405C	VNG_1066C	VNG0405C	VNG1066C	Hypothetical protein	Hypothetical protein	0.903
VNG_0405C	dpg	VNG0405C	VNG0318G	Hypothetical protein	dolichol-P-glucose synthetase	0.885
VNG_0405C	graD4	VNG0405C	VNG1055G	Hypothetical protein	Glucose-1-phosphate thymidylyltransferase	0.864
VNG_0405C	udg1	VNG0405C	VNG1048G	Hypothetical protein	UDP-glucose dehydrogenase	0.883
VNG_1066C	VNG_0073C	VNG1066C	VNG0073C	Hypothetical protein	Hypothetical protein	0.885
VNG_1066C	VNG_0128C	VNG1066C	VNG0128C	Hypothetical protein	Hypothetical protein; Catalyzes the NAD-dependent oxidation of glucose 6- phosphate to 6-phosphogluconolactone	0.885
VNG_1066C	VNG_0267H	VNG1066C	VNG0267H	Hypothetical protein	Hypothetical protein	0.885
VNG_1066C	VNG_0405C	VNG1066C	VNG0405C	Hypothetical protein	Hypothetical protein	0.903

page 1 of 4

Network

Neighborhood

Databases

Fusion

Textmining

Cooccurrence

Experiments

Coexpression

© STRING Consortium 2018

Credits

Access

Info

About