• Version:
  • 10.5 (archived version)
STRINGSTRING
TT_P0029 TT_P0029 TT_C1571 TT_C1571 TT_C0282 TT_C0282 wbpB wbpB TT_C0286 TT_C0286 TT_C0288 TT_C0288 TT_C0280 TT_C0280 TT_C0279 TT_C0279 TT_C0285 TT_C0285 TT_C0284 TT_C0284 TT_C0283 TT_C0283
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wbpBLipopolysaccaride biosynthesis protein wbpB (310 aa)    
Predicted Functional Partners:
TT_C0288
UDP-N-acetyl-D-mannosamine 6-dehydrogenase (443 aa)
 
 
  0.990
TT_C0286
Acetyltransferase (192 aa)
 
   
  0.981
TT_C0284
Pleiotropic regulatory protein (371 aa)
   
 
  0.965
TT_C0283
Hypothetical protein (418 aa)
 
   
  0.948
TT_C0285
UDP-N-acetylglucosamine 2-epimerase (365 aa)
   
   
  0.931
TT_C0282
Asparagine synthetase [glutamine-hydrolyzing] (575 aa)
 
          0.929
TT_P0029
Hypothetical protein (254 aa)
   
 
  0.889
TT_C1571
Hypothetical protein (258 aa)
   
 
  0.889
TT_C0279
Glycosyltransferase (298 aa)
   
   
  0.880
TT_C0280
Lipopolysaccharide N-acetylglucosaminyltransferase (358 aa)
              0.862
Your Current Organism:
Thermus thermophilus HB27
NCBI taxonomy Id: 262724
Other names: T. thermophilus HB27, Thermus thermophilus HB27, Thermus thermophilus str. HB27, Thermus thermophilus strain HB27
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