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  • 10.5 (archived version)
STRINGSTRING
SO_4340 SO_4340 uvrC uvrC cooC cooC SO_2329 SO_2329 SO_4079 SO_4079 fldA fldA SO_2332 SO_2332 SO_0680 SO_0680 efp efp ybfE ybfE
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_2329Hypothetical protein (395 aa)    
Predicted Functional Partners:
efp
Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (186 aa)
 
          0.951
fldA
Flavodoxin FldA; Low-potential electron donor to a number of redox enzymes (175 aa)
              0.624
ybfE
LexA regulated protein (90 aa)
              0.500
SO_2332
Hypothetical protein (73 aa)
              0.488
SO_4340
Hypothetical protein (291 aa)
    
          0.462
cooC
Hypothetical protein (822 aa)
    
          0.437
SO_4079
Hypothetical protein (177 aa)
    
        0.427
SO_0680
Hypothetical protein (1308 aa)
    
          0.419
uvrC
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5’ and 3’ sides of the lesion. The N-terminal half is responsible for the 3’ incision and the C-terminal half is responsible for the 5’ incision (609 aa)
              0.403
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis, S. oneidensis MR-1, Shewanella oneidensis, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella putrefaciens MR-1, Shewanella sp. MR-1, Shewanella sp. SCH0401
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