MSMEG_5447 protein (Mycobacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MSMEG_5447

Dolichyl-phosphate-mannose-protein mannosyltransferase (516 aa)

Predicted Functional Partners:

MSMEG_4287

0.775

MSMEG_4273

0.770

pgl

0.761

rsmI

0.756

MSMEG_4572

0.743

MSMEG_0973

0.721

MSMEG_5817

0.704

MSMEG_4261

0.696

MSMEG_5685

0.690

MSMEG_2396

0.658

Your Current Organism:

Mycobacterium smegmatis

NCBI taxonomy Id: 246196
Other names: Bacillus smegmatis, Bacterium smegmatis, M. smegmatis, M. smegmatis str. MC2 155, Mycobacterium paratuberculosis smegmatis, Mycobacterium smegmatis, Mycobacterium smegmatis MC2 155, Mycobacterium smegmatis str. MC2 155, Mycobacterium smegmatis strain MC2 155

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MSMEG_0973	MSMEG_2396	MSMEG_0973	MSMEG_2396	Hypothetical protein	Hypothetical protein	0.662
MSMEG_0973	MSMEG_4261	MSMEG_0973	MSMEG_4261	Hypothetical protein	Ubiquinol-cytochrome C reductase cytochrome C subunit	0.808
MSMEG_0973	MSMEG_4273	MSMEG_0973	MSMEG_4273	Hypothetical protein	Integral membrane protein	0.742
MSMEG_0973	MSMEG_4287	MSMEG_0973	MSMEG_4287	Hypothetical protein	Integral membrane protein	0.743
MSMEG_0973	MSMEG_4572	MSMEG_0973	MSMEG_4572	Hypothetical protein	Hypothetical protein	0.614
MSMEG_0973	MSMEG_5447	MSMEG_0973	MSMEG_5447	Hypothetical protein	Dolichyl-phosphate-mannose-protein mannosyltransferase	0.721
MSMEG_0973	MSMEG_5685	MSMEG_0973	MSMEG_5685	Hypothetical protein	DNA-binding protein	0.614
MSMEG_0973	MSMEG_5817	MSMEG_0973	MSMEG_5817	Hypothetical protein	Hypothetical protein	0.471
MSMEG_2396	MSMEG_0973	MSMEG_2396	MSMEG_0973	Hypothetical protein	Hypothetical protein	0.662
MSMEG_2396	MSMEG_4273	MSMEG_2396	MSMEG_4273	Hypothetical protein	Integral membrane protein	0.744
MSMEG_2396	MSMEG_4287	MSMEG_2396	MSMEG_4287	Hypothetical protein	Integral membrane protein	0.724
MSMEG_2396	MSMEG_4572	MSMEG_2396	MSMEG_4572	Hypothetical protein	Hypothetical protein	0.489
MSMEG_2396	MSMEG_5447	MSMEG_2396	MSMEG_5447	Hypothetical protein	Dolichyl-phosphate-mannose-protein mannosyltransferase	0.658
MSMEG_2396	MSMEG_5685	MSMEG_2396	MSMEG_5685	Hypothetical protein	DNA-binding protein	0.686
MSMEG_4261	MSMEG_0973	MSMEG_4261	MSMEG_0973	Ubiquinol-cytochrome C reductase cytochrome C subunit	Hypothetical protein	0.808
MSMEG_4261	MSMEG_4273	MSMEG_4261	MSMEG_4273	Ubiquinol-cytochrome C reductase cytochrome C subunit	Integral membrane protein	0.562
MSMEG_4261	MSMEG_4287	MSMEG_4261	MSMEG_4287	Ubiquinol-cytochrome C reductase cytochrome C subunit	Integral membrane protein	0.689
MSMEG_4261	MSMEG_4572	MSMEG_4261	MSMEG_4572	Ubiquinol-cytochrome C reductase cytochrome C subunit	Hypothetical protein	0.526
MSMEG_4261	MSMEG_5447	MSMEG_4261	MSMEG_5447	Ubiquinol-cytochrome C reductase cytochrome C subunit	Dolichyl-phosphate-mannose-protein mannosyltransferase	0.696
MSMEG_4273	MSMEG_0973	MSMEG_4273	MSMEG_0973	Integral membrane protein	Hypothetical protein	0.742

page 1 of 4

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

© STRING Consortium 2018

Credits

Access

Info

About