lmo0688 protein (Listeria monocytogenes EGDe)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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textmining

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protein homology

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[Homology]

Score

lmo0688

Hypothetical protein (637 aa)

Predicted Functional Partners:

flaA

0.874

lmo0689

0.872

lmo2554

0.796

motB

0.789

lmo0687

0.783

lmo0685

0.772

lmo2555

0.762

gtcA

0.749

lmo1744

0.726

lmo1477

0.726

Your Current Organism:

Listeria monocytogenes EGDe

NCBI taxonomy Id: 169963
Other names: L. monocytogenes EGD-e, Listeria monocytogenes ATCC BAA-679, Listeria monocytogenes EGD-e, Listeria monocytogenes EGDe, Listeria monocytogenes str. EGD-e, Listeria monocytogenes strain EGD-e

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
flaA	lmo0685	lmo0690	lmo0685	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella	Flagellar motor protein MotA	0.934
flaA	lmo0687	lmo0690	lmo0687	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella	Hypothetical protein	0.427
flaA	lmo0688	lmo0690	lmo0688	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella	Hypothetical protein	0.874
flaA	lmo0689	lmo0690	lmo0689	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella	Hypothetical protein	0.873
flaA	motB	lmo0690	lmo0686	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella	Hypothetical protein	0.974
gtcA	lmo0688	lmo2549	lmo0688	Wall teichoic acid glycosylation protein GtcA; Involved in the decoration of cell wall teichoic acid with galactose and glucose	Hypothetical protein	0.749
lmo0685	flaA	lmo0685	lmo0690	Flagellar motor protein MotA	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella	0.934
lmo0685	lmo0687	lmo0685	lmo0687	Flagellar motor protein MotA	Hypothetical protein	0.845
lmo0685	lmo0688	lmo0685	lmo0688	Flagellar motor protein MotA	Hypothetical protein	0.772
lmo0685	lmo0689	lmo0685	lmo0689	Flagellar motor protein MotA	Hypothetical protein	0.984
lmo0685	motB	lmo0685	lmo0686	Flagellar motor protein MotA	Hypothetical protein	0.999
lmo0687	flaA	lmo0687	lmo0690	Hypothetical protein	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella	0.427
lmo0687	lmo0685	lmo0687	lmo0685	Hypothetical protein	Flagellar motor protein MotA	0.845
lmo0687	lmo0688	lmo0687	lmo0688	Hypothetical protein	Hypothetical protein	0.783
lmo0687	lmo0689	lmo0687	lmo0689	Hypothetical protein	Hypothetical protein	0.757
lmo0687	motB	lmo0687	lmo0686	Hypothetical protein	Hypothetical protein	0.845
lmo0688	flaA	lmo0688	lmo0690	Hypothetical protein	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella	0.874
lmo0688	gtcA	lmo0688	lmo2549	Hypothetical protein	Wall teichoic acid glycosylation protein GtcA; Involved in the decoration of cell wall teichoic acid with galactose and glucose	0.749
lmo0688	lmo0685	lmo0688	lmo0685	Hypothetical protein	Flagellar motor protein MotA	0.772
lmo0688	lmo0687	lmo0688	lmo0687	Hypothetical protein	Hypothetical protein	0.783

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