RSc0559 protein (Ralstonia solanacearum GMI1000)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

RSc0559

Hypothetical protein (569 aa)

Predicted Functional Partners:

RSc0686

0.779

RSc1503

0.740

RSc3178

0.728

RSc0647

0.714

RSc2201

0.701

RSc2508

0.692

RSc2203

0.690

gspN

0.682

RSc3401

0.668

gspL

0.668

Your Current Organism:

Ralstonia solanacearum GMI1000

NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RSc0559	RSc0647	RSc0559	RSc0647	Hypothetical protein	Hypothetical protein	0.714
RSc0559	RSc0686	RSc0559	RSc0686	Hypothetical protein	Lipopolysaccharide O-SIDE chain biosynthesis transmembrane protein	0.779
RSc0559	RSc1503	RSc0559	RSc1503	Hypothetical protein	Hypothetical protein	0.740
RSc0559	RSc2201	RSc0559	RSc2201	Hypothetical protein	Signal peptide protein	0.701
RSc0559	RSc2203	RSc0559	RSc2203	Hypothetical protein	Hypothetical protein	0.690
RSc0559	RSc2508	RSc0559	RSc2508	Hypothetical protein	Hypothetical protein	0.692
RSc0559	RSc3178	RSc0559	RSc3178	Hypothetical protein	Protein	0.728
RSc0559	RSc3401	RSc0559	RSc3401	Hypothetical protein	Hypothetical protein	0.668
RSc0559	gspL	RSc0559	RSc3111	Hypothetical protein	General secretion pathway protein L	0.668
RSc0559	gspN	RSc0559	RSc3113	Hypothetical protein	General secretion pathway protein N	0.682
RSc0647	RSc0559	RSc0647	RSc0559	Hypothetical protein	Hypothetical protein	0.714
RSc0647	RSc0686	RSc0647	RSc0686	Hypothetical protein	Lipopolysaccharide O-SIDE chain biosynthesis transmembrane protein	0.763
RSc0647	RSc1503	RSc0647	RSc1503	Hypothetical protein	Hypothetical protein	0.782
RSc0647	RSc2508	RSc0647	RSc2508	Hypothetical protein	Hypothetical protein	0.774
RSc0647	RSc3178	RSc0647	RSc3178	Hypothetical protein	Protein	0.781
RSc0647	RSc3401	RSc0647	RSc3401	Hypothetical protein	Hypothetical protein	0.776
RSc0647	gspL	RSc0647	RSc3111	Hypothetical protein	General secretion pathway protein L	0.602
RSc0686	RSc0559	RSc0686	RSc0559	Lipopolysaccharide O-SIDE chain biosynthesis transmembrane protein	Hypothetical protein	0.779
RSc0686	RSc0647	RSc0686	RSc0647	Lipopolysaccharide O-SIDE chain biosynthesis transmembrane protein	Hypothetical protein	0.763
RSc0686	RSc1503	RSc0686	RSc1503	Lipopolysaccharide O-SIDE chain biosynthesis transmembrane protein	Hypothetical protein	0.769

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