MMP1085 protein (Methanococcus maripaludis S2)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MMP1085

Hypothetical protein (224 aa)

Predicted Functional Partners:

MMP1084

0.980

MMP1086

0.918

MMP1087

0.918

MMP1088

0.801

MMP1080

0.726

MMP1424

0.703

wbpG

0.690

MMP1033

0.656

MMP0350

0.646

wecB

0.643

Your Current Organism:

Methanococcus maripaludis S2

NCBI taxonomy Id: 267377
Other names: M. maripaludis S2, Methanococcus maripaludis LL, Methanococcus maripaludis S2, Methanococcus maripaludis str. S2, Methanococcus maripaludis strain S2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MMP0350	MMP1080	MMP0350	MMP1080	Hexapeptide repeat-containing transferase	Group 1 glycosyl transferase	0.906
MMP0350	MMP1084	MMP0350	MMP1084	Hexapeptide repeat-containing transferase	Hypothetical protein	0.848
MMP0350	MMP1085	MMP0350	MMP1085	Hexapeptide repeat-containing transferase	Hypothetical protein	0.646
MMP0350	MMP1087	MMP0350	MMP1087	Hexapeptide repeat-containing transferase	Hypothetical protein	0.659
MMP0350	MMP1088	MMP0350	MMP1088	Hexapeptide repeat-containing transferase	Group 1 glycosyl transferase	0.882
MMP0350	MMP1424	MMP0350	MMP1424	Hexapeptide repeat-containing transferase	Oligosaccharyl transferase, STT3 subunit	0.836
MMP0350	wbpG	MMP0350	MMP1081	Hexapeptide repeat-containing transferase	LPS biosynthesis protein WbpG	0.762
MMP0350	wecB	MMP0350	MMP0705	Hexapeptide repeat-containing transferase	UDP-N-acetylglucosamine 2-epimerase; Catalyzes the reversible epimerization at C-2 of UDP-N- acetylglucosamine (UDP-GlcNAc) to produce UDP-N-acetylmannosamine (UDP-ManNAc), the activated donor of ManNAc residues	0.859
MMP1033	MMP1084	MMP1033	MMP1084	Hypothetical protein	Hypothetical protein	0.691
MMP1033	MMP1085	MMP1033	MMP1085	Hypothetical protein	Hypothetical protein	0.656
MMP1033	MMP1086	MMP1033	MMP1086	Hypothetical protein	Hypothetical protein	0.462
MMP1033	MMP1087	MMP1033	MMP1087	Hypothetical protein	Hypothetical protein	0.663
MMP1080	MMP0350	MMP1080	MMP0350	Group 1 glycosyl transferase	Hexapeptide repeat-containing transferase	0.906
MMP1080	MMP1084	MMP1080	MMP1084	Group 1 glycosyl transferase	Hypothetical protein	0.849
MMP1080	MMP1085	MMP1080	MMP1085	Group 1 glycosyl transferase	Hypothetical protein	0.726
MMP1080	MMP1087	MMP1080	MMP1087	Group 1 glycosyl transferase	Hypothetical protein	0.653
MMP1080	MMP1088	MMP1080	MMP1088	Group 1 glycosyl transferase	Group 1 glycosyl transferase	0.700
MMP1080	MMP1424	MMP1080	MMP1424	Group 1 glycosyl transferase	Oligosaccharyl transferase, STT3 subunit	0.720
MMP1080	wbpG	MMP1080	MMP1081	Group 1 glycosyl transferase	LPS biosynthesis protein WbpG	0.669
MMP1080	wecB	MMP1080	MMP0705	Group 1 glycosyl transferase	UDP-N-acetylglucosamine 2-epimerase; Catalyzes the reversible epimerization at C-2 of UDP-N- acetylglucosamine (UDP-GlcNAc) to produce UDP-N-acetylmannosamine (UDP-ManNAc), the activated donor of ManNAc residues	0.862

page 1 of 5

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2018

Credits

Access

Info

About