NMB0596 protein (Neisseria meningitidis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

Neighborhood

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[Homology]

Score

NMB0596

Hypothetical protein (604 aa)

Predicted Functional Partners:

NMB0597

0.879

NMB0598

0.850

NMB1225

0.778

NMB1440

0.775

NMB0889

0.775

NMB0730

0.774

NMB1818

0.773

NMB0887

0.769

NMB0594

0.768

NMB0314

0.767

Your Current Organism:

Neisseria meningitidis

NCBI taxonomy Id: 122586
Other names: Diplokokkus intracellularis meningitidis, Micrococcus intracellularis, Micrococcus meningitidis, Micrococcus meningitidis cerebrospinalis, N. meningitidis, N. meningitidis MC58, N. meningitidis serogroup B, Neisseria meningitidis, Neisseria meningitidis (group B), Neisseria meningitidis (serogroup B), Neisseria meningitidis MC58, Neisseria meningitidis group B, Neisseria meningitidis serogroup B, Neisseria meningitidis serogroup B strain MC58, Neisseria weichselbaumii

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
NMB0314	NMB0596	Hypothetical protein	Hypothetical protein	0.767
NMB0314	NMB0730	Hypothetical protein	FxsA protein	0.707
NMB0314	NMB0887	Hypothetical protein	Type IV pilus assembly protein PilV	0.658
NMB0314	NMB0889	Hypothetical protein	Hypothetical protein	0.687
NMB0314	NMB1225	Hypothetical protein	Hypothetical protein	0.768
NMB0314	NMB1440	Hypothetical protein	Hypothetical protein	0.766
NMB0314	NMB1818	Hypothetical protein	Lipopolysaccharide biosynthesis protein	0.476
NMB0594	NMB0596	Sensor histidine kinase	Hypothetical protein	0.768
NMB0594	NMB0597	Sensor histidine kinase	Hypothetical protein	0.485
NMB0594	NMB0598	Sensor histidine kinase	Maf-like protein	0.482
NMB0594	NMB0730	Sensor histidine kinase	FxsA protein	0.427
NMB0594	NMB1440	Sensor histidine kinase	Hypothetical protein	0.521
NMB0596	NMB0314	Hypothetical protein	Hypothetical protein	0.767
NMB0596	NMB0594	Hypothetical protein	Sensor histidine kinase	0.768
NMB0596	NMB0597	Hypothetical protein	Hypothetical protein	0.879
NMB0596	NMB0598	Hypothetical protein	Maf-like protein	0.850
NMB0596	NMB0730	Hypothetical protein	FxsA protein	0.774
NMB0596	NMB0887	Hypothetical protein	Type IV pilus assembly protein PilV	0.769
NMB0596	NMB0889	Hypothetical protein	Hypothetical protein	0.775
NMB0596	NMB1225	Hypothetical protein	Hypothetical protein	0.778

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