amb0685 protein (Magnetospirillum magneticum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

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protein homology

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Score

amb0685

Hypothetical protein (666 aa)

Predicted Functional Partners:

amb0688

0.864

amb0687

0.859

amb0686

0.859

amb0713

0.743

amb0716

0.674

amb0080

0.652

amb0088

0.624

amb0092

0.604

amb0091

0.586

amb0717

0.522

Your Current Organism:

Magnetospirillum magneticum

NCBI taxonomy Id: 342108
Other names: M. magneticum, M. magneticum AMB-1, Magnetospirillum, Magnetospirillum magneticum, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
amb0080	amb0088	Sialic acid synthase	CMP-N-acetylneuraminic acid synthetase	0.997
amb0080	amb0091	Sialic acid synthase	CMP-N-acetylneuraminic acid synthetase	0.997
amb0080	amb0092	Sialic acid synthase	Sialic acid synthase	0.895
amb0080	amb0685	Sialic acid synthase	Hypothetical protein	0.652
amb0080	amb0713	Sialic acid synthase	Sialic acid synthase	0.825
amb0080	amb0716	Sialic acid synthase	Nucleoside-diphosphate sugar epimerase	0.727
amb0080	amb0717	Sialic acid synthase	Pyridoxal phosphate-dependent enzyme apparently	0.624
amb0088	amb0080	CMP-N-acetylneuraminic acid synthetase	Sialic acid synthase	0.997
amb0088	amb0091	CMP-N-acetylneuraminic acid synthetase	CMP-N-acetylneuraminic acid synthetase	0.945
amb0088	amb0092	CMP-N-acetylneuraminic acid synthetase	Sialic acid synthase	0.998
amb0088	amb0685	CMP-N-acetylneuraminic acid synthetase	Hypothetical protein	0.624
amb0088	amb0713	CMP-N-acetylneuraminic acid synthetase	Sialic acid synthase	0.993
amb0088	amb0716	CMP-N-acetylneuraminic acid synthetase	Nucleoside-diphosphate sugar epimerase	0.483
amb0088	amb0717	CMP-N-acetylneuraminic acid synthetase	Pyridoxal phosphate-dependent enzyme apparently	0.468
amb0091	amb0080	CMP-N-acetylneuraminic acid synthetase	Sialic acid synthase	0.997
amb0091	amb0088	CMP-N-acetylneuraminic acid synthetase	CMP-N-acetylneuraminic acid synthetase	0.945
amb0091	amb0092	CMP-N-acetylneuraminic acid synthetase	Sialic acid synthase	0.999
amb0091	amb0685	CMP-N-acetylneuraminic acid synthetase	Hypothetical protein	0.586
amb0091	amb0713	CMP-N-acetylneuraminic acid synthetase	Sialic acid synthase	0.993
amb0091	amb0716	CMP-N-acetylneuraminic acid synthetase	Nucleoside-diphosphate sugar epimerase	0.483

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