## taxon_id STRING_type STRING_name_compact official_name_NCBI 394 periphery Sinorhizobium fredii NGR234 Sinorhizobium fredii NGR234 882 periphery Desulfovibrio vulgaris Hildenborough Desulfovibrio vulgaris str. Hildenborough 883 periphery Desulfovibrio vulgaris Miyazaki Desulfovibrio vulgaris str. 'Miyazaki F' 1140 periphery Synechococcus elongatus PCC7942 Synechococcus elongatus PCC 7942 1148 core Synechocystis sp. PCC6803 Synechocystis sp. PCC 6803 2110 periphery Mycoplasma agalactiae Mycoplasma agalactiae 2850 core Phaeodactylum tricornutum Phaeodactylum tricornutum 3055 core Chlamydomonas reinhardtii Chlamydomonas reinhardtii 3218 core Physcomitrella patens Physcomitrella patens 3694 core Populus trichocarpa Populus trichocarpa 3702 core Arabidopsis thaliana Arabidopsis thaliana 3711 core Brassica rapa Brassica rapa 3847 core Glycine max Glycine max 4081 core Solanum lycopersicum Solanum lycopersicum 4113 core Solanum tuberosum Solanum tuberosum 4513 core Hordeum vulgare Hordeum vulgare 4533 periphery Oryza brachyantha Oryza brachyantha 4538 periphery Oryza glaberrima Oryza glaberrima 4555 core Setaria italica Setaria italica 4558 periphery Sorghum bicolor Sorghum bicolor 4577 core Zea mays Zea mays 4641 core Musa acuminata Musa acuminata 4787 core Phytophthora infestans Phytophthora infestans 4896 core Schizosaccharomyces pombe Schizosaccharomyces pombe 4929 periphery Pichia guilliermondii Pichia guilliermondii 4932 core Saccharomyces cerevisiae Saccharomyces cerevisiae 4950 core Torulaspora delbrueckii Torulaspora delbrueckii 4952 core Yarrowia lipolytica Yarrowia lipolytica 4956 periphery Zygosaccharomyces rouxii Zygosaccharomyces rouxii 5022 core Leptosphaeria maculans Leptosphaeria maculans 5057 periphery Aspergillus clavatus Aspergillus clavatus 5059 periphery Aspergillus flavus Aspergillus flavus 5061 periphery Aspergillus niger Aspergillus niger 5062 periphery Aspergillus oryzae Aspergillus oryzae 5085 core Aspergillus fumigatus Aspergillus fumigatus 5141 core Neurospora crassa Neurospora crassa 5180 periphery Sclerotinia sclerotiorum Sclerotinia sclerotiorum 5270 core Ustilago maydis Ustilago maydis 5297 core Puccinia graminis Puccinia graminis 5306 periphery Phanerochaete chrysosporium Phanerochaete chrysosporium 5507 periphery Fusarium oxysporum Fusarium oxysporum 5518 core Gibberella zeae Gibberella zeae 5661 periphery Leishmania donovani Leishmania donovani 5664 periphery Leishmania major Leishmania major 5691 periphery Trypanosoma brucei Trypanosoma brucei 5722 core Trichomonas vaginalis Trichomonas vaginalis 5759 periphery Entamoeba histolytica Entamoeba histolytica 5762 periphery Naegleria gruberi Naegleria gruberi 5786 core Dictyostelium purpureum Dictyostelium purpureum 5811 periphery Toxoplasma gondii Toxoplasma gondii 5821 periphery Plasmodium berghei Plasmodium berghei 5825 periphery Plasmodium chabaudi Plasmodium chabaudi 5833 core Plasmodium falciparum Plasmodium falciparum 5850 periphery Plasmodium knowlesi Plasmodium knowlesi 5855 periphery Plasmodium vivax Plasmodium vivax 5911 periphery Tetrahymena thermophila Tetrahymena thermophila 6085 core Hydra magnipapillata Hydra magnipapillata 6183 core Schistosoma mansoni Schistosoma mansoni 6238 periphery Caenorhabditis briggsae Caenorhabditis briggsae 6239 core Caenorhabditis elegans Caenorhabditis elegans 6334 periphery Trichinella spiralis Trichinella spiralis 6669 core Daphnia pulex Daphnia pulex 6945 core Ixodes scapularis Ixodes scapularis 7029 core Acyrthosiphon pisum Acyrthosiphon pisum 7070 periphery Tribolium castaneum Tribolium castaneum 7091 core Bombyx mori Bombyx mori 7159 periphery Aedes aegypti Aedes aegypti 7165 periphery Anopheles gambiae Anopheles gambiae 7176 periphery Culex quinquefasciatus Culex quinquefasciatus 7217 periphery Drosophila ananassae Drosophila ananassae 7222 periphery Drosophila grimshawi Drosophila grimshawi 7227 core Drosophila melanogaster Drosophila melanogaster 7237 periphery Drosophila pseudoobscura Drosophila pseudoobscura 7244 periphery Drosophila virilis Drosophila virilis 7245 periphery Drosophila yakuba Drosophila yakuba 7260 periphery Drosophila willistoni Drosophila willistoni 7425 core Nasonia vitripennis Nasonia vitripennis 7460 core Apis mellifera Apis mellifera 7668 periphery Strongylocentrotus purpuratus Strongylocentrotus purpuratus 7719 core Ciona intestinalis Ciona intestinalis 7739 core Branchiostoma floridae Branchiostoma floridae 7757 periphery Petromyzon marinus Petromyzon marinus 7897 core Latimeria chalumnae Latimeria chalumnae 7955 periphery Danio rerio Danio rerio 8049 core Gadus morhua Gadus morhua 8083 core Xiphophorus maculatus Xiphophorus maculatus 8090 periphery Oryzias latipes Oryzias latipes 8128 core Oreochromis niloticus Oreochromis niloticus 8364 core Xenopus Silurana Xenopus (Silurana) tropicalis 9031 core Gallus gallus Gallus gallus 9103 periphery Meleagris gallopavo Meleagris gallopavo 9258 core Ornithorhynchus anatinus Ornithorhynchus anatinus 9305 core Sarcophilus harrisii Sarcophilus harrisii 9315 periphery Macropus eugenii Macropus eugenii 9361 periphery Dasypus novemcinctus Dasypus novemcinctus 9371 periphery Echinops telfairi Echinops telfairi 9478 periphery Tarsius syrichta Tarsius syrichta 9483 core Callithrix jacchus Callithrix jacchus 9544 periphery Macaca mulatta Macaca mulatta 9593 core Gorilla gorilla Gorilla gorilla 9598 periphery Pan troglodytes Pan troglodytes 9601 periphery Pongo abelii Pongo abelii 9606 core Homo sapiens Homo sapiens 9615 core Canis lupus Canis lupus familiaris 9646 core Ailuropoda melanoleuca Ailuropoda melanoleuca 9669 core Mustela putorius Mustela putorius furo 9685 periphery Felis catus Felis catus 9739 core Tursiops truncatus Tursiops truncatus 9785 core Loxodonta africana Loxodonta africana 9796 periphery Equus caballus Equus caballus 9813 periphery Procavia capensis Procavia capensis 9823 periphery Sus scrofa Sus scrofa 9913 periphery Bos taurus Bos taurus 9986 periphery Oryctolagus cuniculus Oryctolagus cuniculus 10020 periphery Dipodomys ordii Dipodomys ordii 10090 core Mus musculus Mus musculus 10116 periphery Rattus norvegicus Rattus norvegicus 10141 periphery Cavia porcellus Cavia porcellus 10228 core Trichoplax adhaerens Trichoplax adhaerens 12957 core Atta cephalotes Atta cephalotes 13037 core Danaus plexippus Danaus plexippus 13616 core Monodelphis domestica Monodelphis domestica 13684 periphery Phaeosphaeria nodorum Phaeosphaeria nodorum 13735 core Pelodiscus sinensis Pelodiscus sinensis 15368 periphery Brachypodium distachyon Brachypodium distachyon 28377 periphery Anolis carolinensis Anolis carolinensis 29760 periphery Vitis vinifera Vitis vinifera 29850 core Gaeumannomyces graminis Gaeumannomyces graminis 29875 core Hypocrea virens Hypocrea virens 30608 periphery Microcebus murinus Microcebus murinus 30611 core Otolemur garnettii Otolemur garnettii 31033 periphery Takifugu rubripes Takifugu rubripes 31234 periphery Caenorhabditis remanei Caenorhabditis remanei 31964 core Clavibacter michiganensis sepedonicus Clavibacter michiganensis subsp. sepedonicus 32049 core Synechococcus sp. PCC7002 Synechococcus sp. PCC 7002 32051 periphery Synechococcus sp. WH7803 Synechococcus sp. WH 7803 33169 core Eremothecium gossypii Eremothecium gossypii 33178 periphery Aspergillus terreus Aspergillus terreus 34740 periphery Heliconius melpomene Heliconius melpomene 35128 core Thalassiosira pseudonana Thalassiosira pseudonana 36630 core Neosartorya fischeri Neosartorya fischeri 36870 core Wigglesworthia glossinidia Gb Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis 37347 periphery Tupaia belangeri Tupaia belangeri 37692 core Phytoplasma mali Candidatus Phytoplasma mali 39416 periphery Tuber melanosporum Tuber melanosporum 39946 periphery Oryza sativa Indica Oryza sativa Indica Group 39947 core Oryza sativa Japonica Oryza sativa Japonica Group 40041 periphery Streptococcus equi Streptococcus equi subsp. zooepidemicus 40559 core Botryotinia fuckeliana Botryotinia fuckeliana 41431 periphery Cyanothece sp. PCC8801 Cyanothece sp. PCC 8801 43151 periphery Anopheles darlingi Anopheles darlingi 43179 core Ictidomys tridecemlineatus Ictidomys tridecemlineatus 43989 periphery Cyanothece sp. ATCC51142 Cyanothece sp. ATCC 51142 44689 core Dictyostelium discoideum Dictyostelium discoideum 45157 periphery Cyanidioschyzon merolae Cyanidioschyzon merolae 45351 periphery Nematostella vectensis Nematostella vectensis 50743 periphery unidentified eubacterium SCB49 unidentified eubacterium SCB49 51453 periphery Hypocrea jecorina Hypocrea jecorina 51511 periphery Ciona savignyi Ciona savignyi 52598 core Sulfitobacter sp. EE36 Sulfitobacter sp. EE-36 54126 periphery Pristionchus pacificus Pristionchus pacificus 56780 core Syntrophus aciditrophicus Syntrophus aciditrophicus SB 58051 core Moritella sp. PE36 Moritella sp. PE36 59196 core Rickettsiella grylli Rickettsiella grylli 59374 core Fibrobacter succinogenes Fibrobacter succinogenes subsp. succinogenes S85 59463 core Myotis lucifugus Myotis lucifugus 59689 periphery Arabidopsis lyrata Arabidopsis lyrata 59729 core Taeniopygia guttata Taeniopygia guttata 59748 periphery Phytoplasma australiense Candidatus Phytoplasma australiense 59919 periphery Prochlorococcus marinus pastoris Prochlorococcus marinus subsp. pastoris str. CCMP1986 59931 periphery Synechococcus sp. WH7805 Synechococcus sp. WH 7805 61853 core Nomascus leucogenys Nomascus leucogenys 62928 core Azoarcus sp. BH72 Azoarcus sp. BH72 62977 core Acinetobacter sp. ADP1 Acinetobacter sp. ADP1 63737 core Nostoc punctiforme Nostoc punctiforme PCC 73102 64091 core Halobacterium sp. NRC1 Halobacterium sp. NRC-1 64471 periphery Synechococcus sp. CC9311 Synechococcus sp. CC9311 65071 core Pythium ultimum Pythium ultimum 65393 core Cyanothece sp. PCC7424 Cyanothece sp. PCC 7424 66692 periphery Bacillus clausii Bacillus clausii KSM-K16 67593 periphery Phytophthora sojae Phytophthora sojae 69014 periphery Thermococcus kodakarensis Thermococcus kodakarensis KOD1 69042 periphery Synechococcus sp. WH5701 Synechococcus sp. WH 5701 69293 core Gasterosteus aculeatus Gasterosteus aculeatus 70448 core Ostreococcus tauri Ostreococcus tauri 70601 periphery Pyrococcus horikoshii Pyrococcus horikoshii OT3 71421 core Haemophilus influenzae Haemophilus influenzae Rd KW20 74546 periphery Prochlorococcus marinus MIT9312 Prochlorococcus marinus str. MIT 9312 74547 periphery Prochlorococcus marinus MIT9313 Prochlorococcus marinus str. MIT 9313 76114 core Aromatoleum aromaticum Aromatoleum aromaticum EbN1 76869 periphery Pseudomonas putida GB1 Pseudomonas putida GB-1 78245 core Xanthobacter autotrophicus Xanthobacter autotrophicus Py2 79929 periphery Methanothermobacter marburgensis Methanothermobacter marburgensis str. Marburg 83332 periphery Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis H37Rv 83406 periphery gamma proteobacterium HdN1 gamma proteobacterium HdN1 84588 periphery Synechococcus sp. WH8102 Synechococcus sp. WH 8102 85643 core Thauera sp. MZ1T Thauera sp. MZ1T 85962 periphery Helicobacter pylori 26695 Helicobacter pylori 26695 85963 periphery Helicobacter pylori J99 Helicobacter pylori J99 87626 periphery Pseudoalteromonas tunicata Pseudoalteromonas tunicata D2 88036 core Selaginella moellendorffii Selaginella moellendorffii 89187 periphery Roseovarius nubinhibens Roseovarius nubinhibens ISM 91464 periphery Synechococcus sp. PCC7335 Synechococcus sp. PCC 7335 93059 periphery Prochlorococcus marinus MIT9211 Prochlorococcus marinus str. MIT 9211 93060 periphery Prochlorococcus marinus MIT9215 Prochlorococcus marinus str. MIT 9215 93061 periphery Staphylococcus aureus NCTC8325 Staphylococcus aureus subsp. aureus NCTC 8325 93062 periphery Staphylococcus aureus COL Staphylococcus aureus subsp. aureus COL 94122 periphery Shewanella sp. ANA3 Shewanella sp. ANA-3 96561 core Desulfococcus oleovorans Desulfococcus oleovorans Hxd3 99287 periphery Salmonella enterica LT2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 99883 periphery Tetraodon nigroviridis Tetraodon nigroviridis 100226 periphery Streptomyces coelicolor Streptomyces coelicolor A3(2) 101510 periphery Rhodococcus jostii Rhodococcus jostii RHA1 103690 periphery Nostoc sp. PCC7120 Nostoc sp. PCC 7120 105559 periphery Nitrosococcus watsonii Nitrosococcus watsonii C-113 106370 core Frankia sp. CcI3 Frankia sp. CcI3 107806 periphery Buchnera aphidicola APS Buchnera aphidicola str. APS (Acyrthosiphon pisum) 110662 periphery Synechococcus sp. CC9605 Synechococcus sp. CC9605 114615 core Bradyrhizobium sp. ORS278 Bradyrhizobium sp. ORS 278 115713 core Chlamydophila pneumoniae CWL029 Chlamydophila pneumoniae CWL029 117187 core Gibberella moniliformis Gibberella moniliformis 118168 core Microcoleus chthonoplastes Microcoleus chthonoplastes PCC 7420 121225 core Pediculus humanus Pediculus humanus 122586 core Neisseria meningitidis Neisseria meningitidis MC58 123214 core Persephonella marina Persephonella marina EX-H1 132908 core Pteropus vampyrus Pteropus vampyrus 134676 core Actinoplanes sp. SE50110 Actinoplanes sp. SE50/110 135651 periphery Caenorhabditis brenneri Caenorhabditis brenneri 137722 periphery Azospirillum sp. B510 Azospirillum sp. B510 138119 core Desulfitobacterium hafniense Desulfitobacterium hafniense Y51 140110 core Necteria haematococca Necteria haematococca 146891 core Prochlorococcus marinus AS9601 Prochlorococcus marinus str. AS9601 148304 periphery Magnaporthe poae Magnaporthe poae 148305 core Magnaporthe grisea Magnaporthe grisea 153948 periphery Nitrosomonas sp. AL212 Nitrosomonas sp. AL212 155864 periphery Escherichia coli O157H7 Escherichia coli O157:H7 str. EDL933 156578 periphery Alteromonadales bacterium Alteromonadales bacterium TW-7 156586 periphery Flavobacteria bacterium BBFL7 Flavobacteria bacterium BBFL7 156889 core Magnetococcus marinus Magnetococcus marinus MC-1 158189 core Sphaerochaeta globus Sphaerochaeta globus str. Buddy 158190 periphery Sphaerochaeta pleomorpha Sphaerochaeta pleomorpha str. Grapes 158878 core Staphylococcus aureus Mu50 Staphylococcus aureus subsp. aureus Mu50 159087 core Dechloromonas aromatica Dechloromonas aromatica RCB 160488 periphery Pseudomonas putida KT2440 Pseudomonas putida KT2440 160490 periphery Streptococcus pyogenes Streptococcus pyogenes M1 GAS 160492 core Xylella fastidiosa Xylella fastidiosa 9a5c 161528 core Erythrobacter sp. SD21 Erythrobacter sp. SD-21 162425 periphery Emericella nidulans Emericella nidulans 163164 core Wolbachia sp. Dm Wolbachia endosymbiont of Drosophila melanogaster 164328 periphery Phytophthora ramorum Phytophthora ramorum 164757 periphery Mycobacterium sp. JLS Mycobacterium sp. JLS 166314 periphery Synechococcus sp. WH8109 Synechococcus sp. WH 8109 167539 periphery Prochlorococcus marinus marinus Prochlorococcus marinus subsp. marinus str. CCMP1375 167542 periphery Prochlorococcus marinus MIT9515 Prochlorococcus marinus str. MIT 9515 167546 periphery Prochlorococcus marinus MIT9301 Prochlorococcus marinus str. MIT 9301 167555 periphery Prochlorococcus marinus NATL1A Prochlorococcus marinus str. NATL1A 167879 core Colwellia psychrerythraea Colwellia psychrerythraea 34H 169963 periphery Listeria monocytogenes EGDe Listeria monocytogenes EGD-e 170187 core Streptococcus pneumoniae TIGR4 Streptococcus pneumoniae TIGR4 171101 periphery Streptococcus pneumoniae R6 Streptococcus pneumoniae R6 176279 periphery Staphylococcus epidermidis RP62A Staphylococcus epidermidis RP62A 176280 periphery Staphylococcus epidermidis ATCC12228 Staphylococcus epidermidis ATCC 12228 176299 periphery Agrobacterium tumefaciens C58 Agrobacterium tumefaciens str. C58 177416 core Francisella tularensis tularensis Francisella tularensis subsp. tularensis SCHU S4 177437 core Desulfobacterium autotrophicum Desulfobacterium autotrophicum HRM2 177439 core Desulfotalea psychrophila Desulfotalea psychrophila LSv54 178306 periphery Pyrobaculum aerophilum Pyrobaculum aerophilum str. IM2 180281 core Cyanobium sp. PCC7001 Cyanobium sp. PCC 7001 182082 periphery Chlamydophila pneumoniae TW183 Chlamydophila pneumoniae TW-183 184922 periphery Giardia lamblia Giardia lamblia ATCC 50803 186497 periphery Pyrococcus furiosus Pyrococcus furiosus DSM 3638 187272 core Alkalilimnicola ehrlichii Alkalilimnicola ehrlichii MLHE-1 187410 periphery Yersinia pestis KIM10 Yersinia pestis KIM10 187420 core Methanothermobacter thermautotrophicus Methanothermobacter thermautotrophicus str. Delta H 188626 core Dermacoccus sp. Ellin185 Dermacoccus sp. Ellin185 188937 periphery Methanosarcina acetivorans Methanosarcina acetivorans C2A 189518 core Leptospira interrogans Lai Leptospira interrogans serovar Lai str. 56601 190192 core Methanopyrus kandleri Methanopyrus kandleri AV19 190304 periphery Fusobacterium nucleatum nucleatum Fusobacterium nucleatum subsp. nucleatum ATCC 25586 190485 core Xanthomonas campestris ATCC33913 Xanthomonas campestris pv. campestris str. ATCC 33913 190486 periphery Xanthomonas axonopodis Xanthomonas axonopodis pv. citri str. 306 190650 periphery Caulobacter crescentus Caulobacter crescentus CB15 192222 core Campylobacter jejuni NCTC11168 Campylobacter jejuni subsp. jejuni NCTC 11168 192952 periphery Methanosarcina mazei Methanosarcina mazei Go1 194439 core Chlorobium tepidum Chlorobium tepidum TLS 195103 periphery Clostridium perfringens ATCC13124 Clostridium perfringens ATCC 13124 196162 core Nocardioides sp. JS614 Nocardioides sp. JS614 196164 periphery Corynebacterium efficiens Corynebacterium efficiens YS-314 196627 periphery Corynebacterium glutamicum Corynebacterium glutamicum ATCC 13032 197221 core Thermosynechococcus elongatus Thermosynechococcus elongatus BP-1 198094 periphery Bacillus anthracis Ames Bacillus anthracis str. Ames 198214 core Shigella flexneri Shigella flexneri 2a str. 301 198628 periphery Dickeya dadantii 3937 Dickeya dadantii 3937 198804 periphery Buchnera aphidicola Sg Buchnera aphidicola str. Sg (Schizaphis graminum) 199310 periphery Escherichia coli CFT073 Escherichia coli CFT073 203119 periphery Clostridium thermocellum Clostridium thermocellum ATCC 27405 203120 periphery Leuconostoc mesenteroides Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 203122 core Saccharophagus degradans Saccharophagus degradans 2-40 203123 core Oenococcus oeni Oenococcus oeni PSU-1 203124 core Trichodesmium erythraeum Trichodesmium erythraeum IMS101 203267 core Tropheryma whipplei Tropheryma whipplei str. Twist 203275 core Tannerella forsythia Tannerella forsythia ATCC 43037 203907 periphery Blochmannia floridanus Candidatus Blochmannia floridanus 204536 core Sulfurihydrogenibium azorense Sulfurihydrogenibium azorense Az-Fu1 204669 core Koribacter versatilis Candidatus Koribacter versatilis Ellin345 204773 core Herminiimonas arsenicoxydans Herminiimonas arsenicoxydans 205914 core Haemophilus somnus Haemophilus somnus 129PT 205918 periphery Pseudomonas syringae syringae Pseudomonas syringae pv. syringae B728a 205920 periphery Ehrlichia chaffeensis Ehrlichia chaffeensis str. Arkansas 205922 periphery Pseudomonas fluorescens Pf01 Pseudomonas fluorescens Pf0-1 206672 periphery Bifidobacterium longum Bifidobacterium longum NCC2705 207559 periphery Desulfovibrio alaskensis Desulfovibrio alaskensis G20 207949 core Bermanella marisrubri Bermanella marisrubri 207954 core Neptuniibacter caesariensis Neptuniibacter caesariensis 208348 periphery Puccinia triticina Puccinia triticina 208596 periphery Carnobacterium sp. 174 Carnobacterium sp. 17-4 208964 periphery Pseudomonas aeruginosa Pseudomonas aeruginosa PAO1 210007 periphery Streptococcus mutans Streptococcus mutans UA159 211110 periphery Streptococcus agalactiae Streptococcus agalactiae NEM316 211586 periphery Shewanella oneidensis Shewanella oneidensis MR-1 212042 core Anaplasma phagocytophilum Anaplasma phagocytophilum HZ 212717 core Clostridium tetani Clostridium tetani E88 213810 periphery Ruminococcus champanellensis Ruminococcus champanellensis 18P13 214092 core Yersinia pestis CO92 Yersinia pestis CO92 214684 periphery Cryptococcus neoformans JEC21 Cryptococcus neoformans var. neoformans JEC21 216432 core Croceibacter atlanticus Croceibacter atlanticus HTCC2559 216591 periphery Burkholderia cenocepacia Burkholderia cenocepacia J2315 216594 periphery Mycobacterium marinum Mycobacterium marinum M 216595 periphery Pseudomonas fluorescens SBW25 Pseudomonas fluorescens SBW25 216596 core Rhizobium leguminosarum viciae Rhizobium leguminosarum bv. viciae 3841 216895 core Vibrio vulnificus Vibrio vulnificus CMCP6 218491 core Pectobacterium atrosepticum Pectobacterium atrosepticum SCRI1043 218493 periphery Salmonella bongori Salmonella bongori NCTC 12419 218495 periphery Streptococcus uberis Streptococcus uberis 0140J 218497 periphery Chlamydophila abortus Chlamydophila abortus S26/3 219305 core Micromonospora sp. ATCC39149 Micromonospora sp. ATCC 39149 220341 core Salmonella enterica CT18 Salmonella enterica subsp. enterica serovar Typhi str. CT18 220664 periphery Pseudomonas fluorescens Pf5 Pseudomonas fluorescens Pf-5 220668 periphery Lactobacillus plantarum Lactobacillus plantarum WCFS1 221109 core Oceanobacillus iheyensis Oceanobacillus iheyensis HTE831 221359 periphery Synechococcus sp. RS9916 Synechococcus sp. RS9916 221360 periphery Synechococcus sp. RS9917 Synechococcus sp. RS9917 221988 core Mannheimia succiniciproducens Mannheimia succiniciproducens MBEL55E 222891 periphery Neorickettsia sennetsu Neorickettsia sennetsu str. Miyayama 222929 core Coccidioides posadasii Coccidioides posadasii C735 delta SOWgp 223283 periphery Pseudomonas syringae tomato Pseudomonas syringae pv. tomato str. DC3000 223926 periphery Vibrio parahaemolyticus Vibrio parahaemolyticus RIMD 2210633 224308 periphery Bacillus subtilis 168 Bacillus subtilis subsp. subtilis str. 168 224324 core Aquifex aeolicus Aquifex aeolicus VF5 224325 periphery Archaeoglobus fulgidus Archaeoglobus fulgidus DSM 4304 224326 periphery Borrelia burgdorferi Borrelia burgdorferi B31 224911 periphery Bradyrhizobium japonicum USDA110 Bradyrhizobium japonicum USDA 110 224914 core Brucella melitensis Brucella melitensis bv. 1 str. 16M 224915 periphery Buchnera aphidicola Bp Buchnera aphidicola str. Bp (Baizongia pistaciae) 225849 periphery Shewanella piezotolerans Shewanella piezotolerans WP3 225937 periphery Marinobacter adhaerens Marinobacter adhaerens HP15 226185 core Enterococcus faecalis Enterococcus faecalis V583 226186 periphery Bacteroides thetaiotaomicron Bacteroides thetaiotaomicron VPI-5482 226900 periphery Bacillus cereus ATCC14579 Bacillus cereus ATCC 14579 227377 core Coxiella burnetii Coxiella burnetii RSA 493 227882 periphery Streptomyces avermitilis Streptomyces avermitilis MA-4680 227941 core Chlamydophila caviae Chlamydophila caviae GPIC 228399 core Actinobacillus pleuropneumoniae 1 Actinobacillus pleuropneumoniae serovar 1 str. 4074 228405 core Hyphomonas neptunium Hyphomonas neptunium ATCC 15444 228410 periphery Nitrosomonas europaea Nitrosomonas europaea ATCC 19718 228908 core Nanoarchaeum equitans Nanoarchaeum equitans Kin4-M 229533 periphery Gibberella zeae PH1 Gibberella zeae PH 1 232348 periphery Synechococcus sp. CB0101 Synechococcus sp. CB0101 232363 periphery Synechococcus sp. CB0205 Synechococcus sp. CB0205 232721 core Acidovorax sp. JS42 Acidovorax sp. JS42 233412 periphery Haemophilus ducreyi Haemophilus ducreyi 35000HP 234267 core Solibacter usitatus Candidatus Solibacter usitatus Ellin6076 234621 periphery Rhodococcus erythropolis Rhodococcus erythropolis PR4 234826 core Anaplasma marginale StMaries Anaplasma marginale str. St. Maries 234831 core Pseudoalteromonas sp. SM9913 Pseudoalteromonas sp. SM9913 235279 periphery Helicobacter hepaticus Helicobacter hepaticus ATCC 51449 235909 core Geobacillus kaustophilus Geobacillus kaustophilus HTA426 236097 core Alcanivorax sp. DG881 Alcanivorax sp. DG881 237727 periphery Erythrobacter sp. NAP1 Erythrobacter sp. NAP1 240015 core Acidobacterium capsulatum Acidobacterium capsulatum ATCC 51196 240016 core Verrucomicrobium spinosum Verrucomicrobium spinosum DSM 4136 240176 core Coprinopsis cinerea Coprinopsis cinerea okayama7_130 240292 core Anabaena variabilis Anabaena variabilis ATCC 29413 242619 core Porphyromonas gingivalis W83 Porphyromonas gingivalis W83 243090 core Rhodopirellula baltica Rhodopirellula baltica SH 1 243159 periphery Acidithiobacillus ferrooxidans ATCC23270 Acidithiobacillus ferrooxidans ATCC 23270 243160 periphery Burkholderia mallei Burkholderia mallei ATCC 23344 243161 core Chlamydia muridarum Chlamydia muridarum Nigg 243164 core Dehalococcoides ethenogenes Dehalococcoides ethenogenes 195 243230 periphery Deinococcus radiodurans Deinococcus radiodurans R1 243231 periphery Geobacter sulfurreducens Geobacter sulfurreducens PCA 243232 periphery Methanocaldococcus jannaschii Methanocaldococcus jannaschii DSM 2661 243233 core Methylococcus capsulatus Methylococcus capsulatus str. Bath 243265 core Photorhabdus luminescens Photorhabdus luminescens subsp. laumondii TTO1 243272 periphery Mycoplasma arthritidis Mycoplasma arthritidis 158L3-1 243273 periphery Mycoplasma genitalium Mycoplasma genitalium G37 243274 periphery Thermotoga maritima Thermotoga maritima MSB8 243275 periphery Treponema denticola Treponema denticola ATCC 35405 243276 periphery Treponema pallidum Treponema pallidum subsp. pallidum str. Nichols 243277 core Vibrio cholerae O1 Vibrio cholerae O1 biovar El Tor str. N16961 243365 core Chromobacterium violaceum Chromobacterium violaceum ATCC 12472 244592 periphery Labrenzia alexandrii Labrenzia alexandrii DFL-11 245014 periphery butyrate-producing bacterium SS34 butyrate-producing bacterium SS3/4 245018 periphery butyrate-producing bacterium SSC2 butyrate-producing bacterium SSC/2 246194 core Carboxydothermus hydrogenoformans Carboxydothermus hydrogenoformans Z-2901 246195 core Dichelobacter nodosus Dichelobacter nodosus VCS1703A 246196 periphery Mycobacterium smegmatis Mycobacterium smegmatis str. MC2 155 246197 periphery Myxococcus xanthus Myxococcus xanthus DK 1622 246199 periphery Ruminococcus albus 8 Ruminococcus albus 8 246200 periphery Ruegeria pomeroyi Ruegeria pomeroyi DSS-3 246201 periphery Streptococcus mitis NCTC12261 Streptococcus mitis NCTC 12261 246410 periphery Coccidioides immitis Coccidioides immitis RS 246969 periphery Thermococcus sp. AM4 Thermococcus sp. AM4 247156 periphery Nocardia farcinica Nocardia farcinica IFM 10152 247633 periphery gamma proteobacterium HTCC2143 marine gamma proteobacterium HTCC2143 247634 periphery gamma proteobacterium HTCC2148 marine gamma proteobacterium HTCC2148 247639 periphery gamma proteobacterium HTCC2080 marine gamma proteobacterium HTCC2080 251221 core Gloeobacter violaceus Gloeobacter violaceus PCC 7421 252305 core Oceanicola batsensis Oceanicola batsensis HTCC2597 253839 periphery Streptomyces sp. C Streptomyces sp. C 254945 periphery Ehrlichia ruminantium Ehrlichia ruminantium str. Welgevonden 255470 periphery Dehalococcoides sp. CBDB1 Dehalococcoides sp. CBDB1 257310 core Bordetella bronchiseptica Bordetella bronchiseptica RB50 257313 periphery Bordetella pertussis Bordetella pertussis Tohama I 257314 periphery Lactobacillus johnsonii Lactobacillus johnsonii NCC 533 257363 periphery Rickettsia typhi Rickettsia typhi str. Wilmington 258594 periphery Rhodopseudomonas palustris CGA009 Rhodopseudomonas palustris CGA009 259536 periphery Psychrobacter arcticus Psychrobacter arcticus 273-4 259564 core Methanococcoides burtonii Methanococcoides burtonii DSM 6242 260799 periphery Bacillus anthracis Sterne Bacillus anthracis str. Sterne 261292 periphery Nitrosomonas sp. Is79A3 Nitrosomonas sp. Is79A3 261317 core Buchnera aphidicola Ct Buchnera aphidicola (Cinara tujafilina) 262316 periphery Mycobacterium avium Mycobacterium avium subsp. paratuberculosis K-10 262543 periphery Exiguobacterium sibiricum Exiguobacterium sibiricum 255-15 262719 periphery Mycoplasma hyopneumoniae Mycoplasma hyopneumoniae J 262723 periphery Mycoplasma synoviae Mycoplasma synoviae 53 262724 core Thermus thermophilus HB27 Thermus thermophilus HB27 262768 periphery Phytoplasma onionis Onion yellows phytoplasma OY-M 263358 core Verrucosispora maris Verrucosispora maris AB-18-032 263820 core Picrophilus torridus Picrophilus torridus DSM 9790 264198 periphery Ralstonia eutropha JMP134 Ralstonia eutropha JMP134 264199 periphery Streptococcus thermophilus Streptococcus thermophilus LMG 18311 264201 core Protochlamydia amoebophila Candidatus Protochlamydia amoebophila UWE25 264202 periphery Chlamydophila felis Chlamydophila felis Fe/C-56 264462 core Bdellovibrio bacteriovorus Bdellovibrio bacteriovorus HD100 264730 periphery Pseudomonas syringae phaseolicola Pseudomonas syringae pv. phaseolicola 1448A 264731 periphery Prevotella ruminicola Prevotella ruminicola 23 264732 core Moorella thermoacetica Moorella thermoacetica ATCC 39073 265072 core Methylobacillus flagellatus Methylobacillus flagellatus KT 265311 core Mesoplasma florum Mesoplasma florum L1 266117 core Rubrobacter xylanophilus Rubrobacter xylanophilus DSM 9941 266264 periphery Cupriavidus metallidurans Cupriavidus metallidurans CH34 266265 periphery Burkholderia xenovorans Burkholderia xenovorans LB400 266779 core Chelativorans sp. BNC1 Chelativorans sp. BNC1 266834 periphery Sinorhizobium meliloti Sinorhizobium meliloti 1021 266835 core Mesorhizobium loti Mesorhizobium loti MAFF303099 266940 core Kineococcus radiotolerans Kineococcus radiotolerans SRS30216 267377 periphery Methanococcus maripaludis S2 Methanococcus maripaludis S2 267608 periphery Ralstonia solanacearum GMI1000 Ralstonia solanacearum GMI1000 267671 periphery Leptospira interrogans Copenhageni Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 267747 core Propionibacterium acnes KPA171202 Propionibacterium acnes KPA171202 267748 periphery Mycoplasma mobile Mycoplasma mobile 163K 269084 periphery Synechococcus elongatus PCC6301 Synechococcus elongatus PCC 6301 269482 periphery Burkholderia vietnamiensis Burkholderia vietnamiensis G4 269484 core Ehrlichia canis Ehrlichia canis str. Jake 269796 core Rhodospirillum rubrum Rhodospirillum rubrum ATCC 11170 269797 core Methanosarcina barkeri Methanosarcina barkeri str. Fusaro 269798 core Cytophaga hutchinsonii Cytophaga hutchinsonii ATCC 33406 269799 core Geobacter metallireducens Geobacter metallireducens GS-15 269800 core Thermobifida fusca Thermobifida fusca YX 270374 periphery Marinobacter sp. ELB17 Marinobacter sp. ELB17 272557 core Aeropyrum pernix Aeropyrum pernix K1 272558 periphery Bacillus halodurans Bacillus halodurans C-125 272559 periphery Bacteroides fragilis NCTC9343 Bacteroides fragilis NCTC 9343 272560 periphery Burkholderia pseudomallei Burkholderia pseudomallei K96243 272561 periphery Chlamydia trachomatis Chlamydia trachomatis D/UW-3/CX 272562 periphery Clostridium acetobutylicum Clostridium acetobutylicum ATCC 824 272563 periphery Clostridium difficile Clostridium difficile 630 272568 periphery Gluconacetobacter diazotrophicus Gluconacetobacter diazotrophicus PAl 5 272569 periphery Haloarcula marismortui Haloarcula marismortui ATCC 43049 272620 periphery Klebsiella pneumoniae Klebsiella pneumoniae subsp. pneumoniae MGH 78578 272621 periphery Lactobacillus acidophilus NCFM Lactobacillus acidophilus NCFM 272623 periphery Lactococcus lactis lactis Lactococcus lactis subsp. lactis Il1403 272624 periphery Legionella pneumophila Philadelphia Legionella pneumophila subsp. pneumophila str. Philadelphia 1 272626 periphery Listeria innocua Listeria innocua Clip11262 272630 periphery Methylobacterium extorquens AM1 Methylobacterium extorquens AM1 272631 periphery Mycobacterium leprae Mycobacterium leprae TN 272632 periphery Mycoplasma mycoides Mycoplasma mycoides subsp. mycoides SC str. PG1 272633 periphery Mycoplasma penetrans Mycoplasma penetrans HF-2 272635 periphery Mycoplasma pulmonis Mycoplasma pulmonis UAB CTIP 272843 periphery Pasteurella multocida Pasteurella multocida subsp. multocida str. Pm70 272844 periphery Pyrococcus abyssi Pyrococcus abyssi GE5 272942 periphery Rhodobacter capsulatus Rhodobacter capsulatus SB 1003 272943 periphery Rhodobacter sphaeroides 241 Rhodobacter sphaeroides 2.4.1 272947 periphery Rickettsia prowazekii Rickettsia prowazekii str. Madrid E 272951 core Rickettsia sibirica Rickettsia sibirica 246 272952 core Hyaloperonospora arabidopsidis Hyaloperonospora arabidopsidis 273057 periphery Sulfolobus solfataricus Sulfolobus solfataricus P2 273063 periphery Sulfolobus tokodaii Sulfolobus tokodaii str. 7 273068 core Thermoanaerobacter tengcongensis Thermoanaerobacter tengcongensis MB4 273075 periphery Thermoplasma acidophilum Thermoplasma acidophilum DSM 1728 273116 core Thermoplasma volcanium Thermoplasma volcanium GSS1 273119 core Ureaplasma parvum Ureaplasma parvum serovar 3 str. ATCC 700970 273121 core Wolinella succinogenes Wolinella succinogenes DSM 1740 274854 periphery uncultured euryarchaeote mgII uncultured marine group II euryarchaeote 278197 core Pediococcus pentosaceus Pediococcus pentosaceus ATCC 25745 279010 periphery Bacillus licheniformis Bacillus licheniformis DSM 13 = ATCC 14580 279238 periphery Novosphingobium aromaticivorans Novosphingobium aromaticivorans DSM 12444 279714 core Pseudogulbenkiania ferrooxidans Pseudogulbenkiania ferrooxidans 2002 279808 periphery Staphylococcus haemolyticus Staphylococcus haemolyticus JCSC1435 281090 core Leifsonia xyli Leifsonia xyli subsp. xyli str. CTCB07 281687 periphery Caenorhabditis japonica Caenorhabditis japonica 281689 core Desulfuromonas acetoxidans Desulfuromonas acetoxidans DSM 684 283165 periphery Bartonella quintana Bartonella quintana str. Toulouse 283166 periphery Bartonella henselae Bartonella henselae str. Houston-1 283643 periphery Cryptococcus neoformans B Cryptococcus neoformans var. neoformans B 3501A 283942 core Idiomarina loihiensis Idiomarina loihiensis L2TR 284590 core Kluyveromyces lactis Kluyveromyces lactis NRRL Y 1140 284593 core Candida glabrata Candida glabrata CBS 138 284813 periphery Encephalitozoon cuniculi Encephalitozoon cuniculi GB M1 287752 core Aurantimonas manganoxydans Aurantimonas manganoxydans SI85-9A1 288000 periphery Bradyrhizobium sp. BTAi1 Bradyrhizobium sp. BTAi1 288705 core Renibacterium salmoninarum Renibacterium salmoninarum ATCC 33209 289376 core Thermodesulfovibrio yellowstonii Thermodesulfovibrio yellowstonii DSM 11347 289397 periphery Mycoplasma bovis Mycoplasma bovis PG45 290315 periphery Chlorobium limicola Chlorobium limicola DSM 245 290317 periphery Chlorobium phaeobacteroides DSM266 Chlorobium phaeobacteroides DSM 266 290318 periphery Chlorobium phaeovibrioides Chlorobium phaeovibrioides DSM 265 290338 periphery Citrobacter koseri Citrobacter koseri ATCC BAA-895 290339 core Cronobacter sakazakii Cronobacter sakazakii ATCC BAA-894 290340 periphery Arthrobacter aurescens Arthrobacter aurescens TC1 290397 core Anaeromyxobacter dehalogenans Anaeromyxobacter dehalogenans 2CP-C 290398 core Chromohalobacter salexigens Chromohalobacter salexigens DSM 3043 290399 periphery Arthrobacter sp. FB24 Arthrobacter sp. FB24 290400 core Jannaschia sp. CCS1 Jannaschia sp. CCS1 290402 periphery Clostridium beijerinckii Clostridium beijerinckii NCIMB 8052 290434 periphery Borrelia garinii Borrelia garinii PBi 290512 core Prosthecochloris aestuarii Prosthecochloris aestuarii DSM 271 290633 core Gluconobacter oxydans Gluconobacter oxydans 621H 291272 periphery Blochmannia pennsylvanicus Candidatus Blochmannia pennsylvanicus str. BPEN 292414 core Ruegeria sp. TM1040 Ruegeria sp. TM1040 292415 core Thiobacillus denitrificans Thiobacillus denitrificans ATCC 25259 292459 core Symbiobacterium thermophilum Symbiobacterium thermophilum IAM 14863 292805 periphery Wolbachia sp. Bm Wolbachia endosymbiont strain TRS of Brugia malayi 293613 periphery Rickettsia canadensis Rickettsia canadensis str. McKiel 293614 periphery Rickettsia akari Rickettsia akari str. Hartford 293826 core Alkaliphilus metalliredigens Alkaliphilus metalliredigens QYMF 294746 periphery Meyerozyma guilliermondii Meyerozyma guilliermondii ATCC 6260 294747 periphery Candida tropicalis Candida tropicalis MYA 3404 296591 core Polaromonas sp. JS666 Polaromonas sp. JS666 297246 core Legionella pneumophila Paris Legionella pneumophila str. Paris 298386 periphery Photobacterium profundum Photobacterium profundum SS9 298653 periphery Frankia sp. EAN1pec Frankia sp. EAN1pec 298654 periphery Frankia sp. EuI1c Frankia sp. EuI1c 300852 periphery Thermus thermophilus HB8 Thermus thermophilus HB8 304371 periphery Methanocella paludicola Methanocella paludicola SANAE 306254 periphery Campylobacter coli Campylobacter coli RM2228 306263 periphery Campylobacter lari Campylobacter lari RM2100 306264 periphery Campylobacter upsaliensis Campylobacter upsaliensis RM3195 306537 periphery Corynebacterium jeikeium Corynebacterium jeikeium K411 306901 core Chaetomium globosum Chaetomium globosum CBS 148.51 306902 periphery Clavispora lusitaniae Clavispora lusitaniae ATCC 42720 309798 core Coprothermobacter proteolyticus Coprothermobacter proteolyticus DSM 5265 309799 periphery Dictyoglomus thermophilum Dictyoglomus thermophilum H-6-12 309800 core Haloferax volcanii Haloferax volcanii DS2 309801 core Thermomicrobium roseum Thermomicrobium roseum DSM 5159 309803 periphery Thermotoga neapolitana Thermotoga neapolitana DSM 4359 309807 core Salinibacter ruber Salinibacter ruber DSM 13855 311402 periphery Agrobacterium vitis Agrobacterium vitis S4 311403 periphery Agrobacterium radiobacter Agrobacterium radiobacter K84 311424 periphery Dehalococcoides sp. VS Dehalococcoides sp. VS 312153 core Polynucleobacter necessarius asymbioticus Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 312284 periphery marine actinobacterium marine actinobacterium PHSC20C1 312309 periphery Vibrio fischeri Vibrio fischeri ES114 313589 core Janibacter sp. HTCC2649 Janibacter sp. HTCC2649 313590 core Dokdonia donghaensis Dokdonia donghaensis MED134 313594 periphery Polaribacter irgensii Polaribacter irgensii 23-P 313595 core Psychroflexus torquis Psychroflexus torquis ATCC 700755 313596 core Robiginitalea biformata Robiginitalea biformata HTCC2501 313598 core Polaribacter sp. MED152 Polaribacter sp. MED152 313603 core Maribacter sp. HTCC2170 Maribacter sp. HTCC2170 313606 core Microscilla marina Microscilla marina ATCC 23134 313612 core Lyngbya sp. PCC Lyngbya sp. PCC 8106 313624 core Nodularia spumigena Nodularia spumigena CCY9414 313625 periphery Synechococcus sp. BL107 Synechococcus sp. BL107 313627 periphery Bacillus sp. NRRLB14911 Bacillus sp. NRRL B-14911 313628 core Lentisphaera araneosa Lentisphaera araneosa HTCC2155 314225 periphery Erythrobacter litoralis Erythrobacter litoralis HTCC2594 314230 core Blastopirellula marina Blastopirellula marina DSM 3645 314231 core Fulvimarina pelagi Fulvimarina pelagi HTCC2506 314232 core Loktanella vestfoldensis Loktanella vestfoldensis SKA53 314253 periphery Nitrobacter sp. Nb311A Nitrobacter sp. Nb-311A 314254 core Oceanicaulis sp. HTCC2633 Oceanicaulis sp. HTCC2633 314256 periphery Oceanicola granulosus Oceanicola granulosus HTCC2516 314260 core Parvularcula bermudensis Parvularcula bermudensis HTCC2503 314262 periphery Roseobacter sp. MED193 Roseobacter sp. MED193 314264 periphery Roseovarius sp. 217 Roseovarius sp. 217 314265 core Pelagibaca bermudensis Pelagibaca bermudensis HTCC2601 314266 periphery Sphingomonas sp. SKA58 Sphingomonas sp. SKA58 314270 periphery Rhodobacteraceae bacterium HTCC2083 Rhodobacteraceae bacterium HTCC2083 314271 core Maritimibacter alkaliphilus Maritimibacter alkaliphilus HTCC2654 314275 core Alteromonas macleodii Alteromonas macleodii str. Deep ecotype 314276 periphery Idiomarina baltica Idiomarina baltica OS145 314277 periphery Marinomonas sp. MED121 Marinomonas sp. MED121 314278 core Nitrococcus mobilis Nitrococcus mobilis Nb-231 314282 periphery Psychromonas sp. CNPT3 Psychromonas sp. CNPT3 314283 core Reinekea blandensis Reinekea blandensis MED297 314285 core Congregibacter litoralis Congregibacter litoralis KT71 314287 periphery gamma proteobacterium HTCC2207 gamma proteobacterium HTCC2207 314292 periphery Photobacterium angustum Photobacterium angustum S14 314315 periphery Lactobacillus sakei Lactobacillus sakei subsp. sakei 23K 314345 core Mariprofundus ferrooxydans Mariprofundus ferrooxydans PV-1 314565 periphery Xanthomonas campestris 8004 Xanthomonas campestris pv. campestris str. 8004 314607 periphery beta proteobacterium KB13 beta proteobacterium KB13 314608 periphery Shewanella benthica Shewanella benthica KT99 314723 periphery Borrelia hermsii Borrelia hermsii DAH 314724 periphery Borrelia turicatae Borrelia turicatae 91E135 315456 periphery Rickettsia felis Rickettsia felis URRWXCal2 315730 periphery Bacillus weihenstephanensis Bacillus weihenstephanensis KBAB4 315749 periphery Bacillus cytotoxicus Bacillus cytotoxicus NVH 391-98 315750 periphery Bacillus pumilus Bacillus pumilus SAFR-032 316055 periphery Rhodopseudomonas palustris BisA53 Rhodopseudomonas palustris BisA53 316056 periphery Rhodopseudomonas palustris BisB18 Rhodopseudomonas palustris BisB18 316057 periphery Rhodopseudomonas palustris BisB5 Rhodopseudomonas palustris BisB5 316058 periphery Rhodopseudomonas palustris HaA2 Rhodopseudomonas palustris HaA2 316067 periphery Geobacter sp. FRC32 Geobacter sp. FRC-32 316273 periphery Xanthomonas campestris vesicatoria Xanthomonas campestris pv. vesicatoria str. 85-10 316274 core Herpetosiphon aurantiacus Herpetosiphon aurantiacus DSM 785 316275 core Aliivibrio salmonicida Aliivibrio salmonicida LFI1238 316278 periphery Synechococcus sp. RCC307 Synechococcus sp. RCC307 316279 periphery Synechococcus sp. CC9902 Synechococcus sp. CC9902 316385 periphery Escherichia coli K12 DH10B Escherichia coli str. K-12 substr. DH10B 316407 periphery Escherichia coli K12 W3110 Escherichia coli str. K-12 substr. W3110 317025 core Thiomicrospira crunogena Thiomicrospira crunogena XCL-2 317655 core Sphingopyxis alaskensis Sphingopyxis alaskensis RB2256 318161 periphery Shewanella denitrificans Shewanella denitrificans OS217 318167 periphery Shewanella frigidimarina Shewanella frigidimarina NCIMB 400 318586 core Paracoccus denitrificans PD1222 Paracoccus denitrificans PD1222 318829 core Magnaporthe oryzae Magnaporthe oryzae 319224 core Shewanella putrefaciens Shewanella putrefaciens CN-32 319225 periphery Chlorobium luteolum Chlorobium luteolum DSM 273 319795 periphery Deinococcus geothermalis Deinococcus geothermalis DSM 11300 320483 periphery Anaplasma marginale Florida Anaplasma marginale str. Florida 320771 core Pedosphaera parvula Pedosphaera parvula Ellin514 321327 periphery Synechococcus sp. JA33Ab Synechococcus sp. JA-3-3Ab 321332 periphery Synechococcus sp. JA23Ba213 Synechococcus sp. JA-2-3Ba(2-13) 321955 periphery Brevibacterium linens Brevibacterium linens BL2 322098 periphery Phytoplasma asteris Aster yellows witches-broom phytoplasma AYWB 322104 core Scheffersomyces stipitis Scheffersomyces stipitis CBS 6054 322710 core Azotobacter vinelandii Azotobacter vinelandii DJ 323097 periphery Nitrobacter hamburgensis Nitrobacter hamburgensis X14 323098 core Nitrobacter winogradskyi Nitrobacter winogradskyi Nb-255 323259 core Methanospirillum hungatei Methanospirillum hungatei JF-1 323261 periphery Nitrosococcus oceani Nitrosococcus oceani ATCC 19707 323848 core Nitrosospira multiformis Nitrosospira multiformis ATCC 25196 323850 periphery Shewanella loihica Shewanella loihica PV-4 324057 periphery Paenibacillus sp. JDR2 Paenibacillus sp. JDR-2 324602 periphery Chloroflexus aurantiacus Chloroflexus aurantiacus J-10-fl 324831 periphery Lactobacillus gasseri Lactobacillus gasseri ATCC 33323 324925 core Pelodictyon phaeoclathratiforme Pelodictyon phaeoclathratiforme BU-1 325240 periphery Shewanella baltica Shewanella baltica OS155 326297 periphery Shewanella amazonensis Shewanella amazonensis SB2B 326298 core Sulfurimonas denitrificans Sulfurimonas denitrificans DSM 1251 326423 periphery Bacillus amyloliquefaciens Bacillus amyloliquefaciens FZB42 326424 periphery Frankia alni Frankia alni ACN14a 326426 periphery Bifidobacterium breve Bifidobacterium breve UCC2003 326427 core Chloroflexus aggregans Chloroflexus aggregans DSM 9485 326442 periphery Pseudoalteromonas haloplanktis TAC125 Pseudoalteromonas haloplanktis TAC125 327275 periphery Shewanella sp. HN41 Shewanella sp. HN-41 329726 core Acaryochloris marina Acaryochloris marina MBIC11017 330214 core Nitrospira defluvii Candidatus Nitrospira defluvii 330779 periphery Sulfolobus acidocaldarius Sulfolobus acidocaldarius DSM 639 331104 core Blattabacterium sp. Bge Blattabacterium sp. (Blattella germanica) str. Bge 331113 core Simkania negevensis Simkania negevensis Z 331635 periphery Chlamydophila pecorum Chlamydophila pecorum E58 331636 periphery Chlamydophila psittaci Chlamydophila psittaci 6BC 331678 periphery Chlorobium phaeobacteroides BS1 Chlorobium phaeobacteroides BS1 331869 periphery alpha proteobacterium BAL199 alpha proteobacterium BAL199 333146 core Ferroplasma acidarmanus Ferroplasma acidarmanus fer1 333668 periphery Theileria parva Theileria parva strain Muguga 333990 core Carnobacterium sp. AT7 Carnobacterium sp. AT7 334413 core Finegoldia magna ATCC29328 Finegoldia magna ATCC 29328 335283 core Nitrosomonas eutropha Nitrosomonas eutropha C91 335284 core Psychrobacter cryohalolentis Psychrobacter cryohalolentis K5 335541 core Syntrophomonas wolfei Syntrophomonas wolfei subsp. wolfei str. Goettingen 335543 core Syntrophobacter fumaroxidans Syntrophobacter fumaroxidans MPOB 335992 periphery Pelagibacter ubique Candidatus Pelagibacter ubique HTCC1062 336963 periphery Uncinocarpus reesii Uncinocarpus reesii 1704 338187 periphery Vibrio harveyi Vibrio harveyi ATCC BAA-1116 338963 periphery Pelobacter carbinolicus Pelobacter carbinolicus DSM 2380 338966 core Pelobacter propionicus Pelobacter propionicus DSM 2379 338969 core Rhodoferax ferrireducens Rhodoferax ferrireducens T118 339670 periphery Burkholderia ambifaria Burkholderia ambifaria AMMD 339671 periphery Actinobacillus succinogenes Actinobacillus succinogenes 130Z 339724 periphery Ajellomyces capsulatus Ajellomyces capsulatus NAm1 339860 core Methanosphaera stadtmanae Methanosphaera stadtmanae DSM 3091 340099 periphery Thermoanaerobacter pseudethanolicus Thermoanaerobacter pseudethanolicus ATCC 33223 340100 core Bordetella petrii Bordetella petrii DSM 12804 340101 core Victivallis vadensis Victivallis vadensis ATCC BAA-548 340177 core Chlorobium chlorochromatii Chlorobium chlorochromatii CaD3 342108 core Magnetospirillum magneticum Magnetospirillum magneticum AMB-1 342451 core Staphylococcus saprophyticus Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 342610 periphery Pseudoalteromonas atlantica Pseudoalteromonas atlantica T6c 342949 core Pyrococcus sp. NA2 Pyrococcus sp. NA2 343509 core Sodalis glossinidius Sodalis glossinidius str. morsitans 344747 periphery Planctomyces maris Planctomyces maris DSM 8797 345073 periphery Vibrio cholerae O395 Vibrio cholerae O395 345219 periphery Bacillus coagulans Bacillus coagulans 36D1 347256 periphery Mycoplasma hominis Mycoplasma hominis ATCC 23114 347834 periphery Rhizobium etli CFN42 Rhizobium etli CFN 42 348780 core Natronomonas pharaonis Natronomonas pharaonis DSM 2160 349102 core Rhodobacter sphaeroides ATCC17025 Rhodobacter sphaeroides ATCC 17025 349106 periphery Psychrobacter sp. PRwf1 Psychrobacter sp. PRwf-1 349123 periphery Lactobacillus reuteri Lactobacillus reuteri 100-23 349124 core Halorhodospira halophila Halorhodospira halophila SL1 349161 periphery Desulfotomaculum reducens Desulfotomaculum reducens MI-1 349163 core Acidiphilium cryptum Acidiphilium cryptum JF-5 349307 periphery Methanosaeta thermophila Methanosaeta thermophila PT 349519 periphery Leuconostoc citreum Leuconostoc citreum KM20 349520 periphery Paenibacillus polymyxa E681 Paenibacillus polymyxa E681 349521 core Hahella chejuensis Hahella chejuensis KCTC 2396 349741 core Akkermansia muciniphila Akkermansia muciniphila ATCC BAA-835 350054 periphery Mycobacterium gilvum Mycobacterium gilvum PYR-GCK 350058 periphery Mycobacterium vanbaalenii Mycobacterium vanbaalenii PYR-1 350688 periphery Alkaliphilus oremlandii Alkaliphilus oremlandii OhILAs 350701 periphery Burkholderia dolosa Burkholderia dolosa AUO158 351016 core Roseobacter sp. AzwK3b Roseobacter sp. AzwK-3b 351160 core Methanocella arvoryzae Methanocella arvoryzae MRE50 351348 core Marinobacter aquaeolei Marinobacter aquaeolei VT8 351605 periphery Geobacter uraniireducens Geobacter uraniireducens Rf4 351607 core Acidothermus cellulolyticus Acidothermus cellulolyticus 11B 351627 periphery Caldicellulosiruptor saccharolyticus Caldicellulosiruptor saccharolyticus DSM 8903 351746 periphery Pseudomonas putida F1 Pseudomonas putida F1 352165 core Pyramidobacter piscolens Pyramidobacter piscolens W5455 352914 periphery Plasmodium yoelii Plasmodium yoelii yoelii 17XNL 353151 periphery Cryptosporidium hominis Cryptosporidium hominis TU502 353152 core Cryptosporidium parvum Cryptosporidium parvum Iowa II 353153 periphery Trypanosoma cruzi Trypanosoma cruzi strain CL Brener 353154 periphery Theileria annulata Theileria annulata strain Ankara 354242 periphery Campylobacter jejuni 81176 Campylobacter jejuni subsp. jejuni 81-176 355276 periphery Leptospira borgpetersenii Leptospira borgpetersenii serovar Hardjo-bovis L550 357244 core Orientia tsutsugamushi Orientia tsutsugamushi str. Boryong 357804 core Psychromonas ingrahamii Psychromonas ingrahamii 37 357808 periphery Roseiflexus sp. RS1 Roseiflexus sp. RS-1 357809 periphery Clostridium phytofermentans Clostridium phytofermentans ISDg 358681 core Brevibacillus brevis Brevibacillus brevis NBRC 100599 360095 core Bartonella bacilliformis Bartonella bacilliformis KC583 360104 periphery Campylobacter concisus Campylobacter concisus 13826 360105 periphery Campylobacter curvus Campylobacter curvus 525.92 360107 core Campylobacter hominis Campylobacter hominis ATCC BAA-381 360910 periphery Bordetella avium Bordetella avium 197N 360911 core Exiguobacterium sp. AT1b Exiguobacterium sp. AT1b 362663 periphery Escherichia coli 536 Escherichia coli 536 362948 periphery Lactobacillus salivarius Lactobacillus salivarius UCC118 362976 core Haloquadratum walsbyi Haloquadratum walsbyi DSM 16790 363253 core Lawsonia intracellularis Lawsonia intracellularis PHE/MN1-00 365044 periphery Polaromonas naphthalenivorans Polaromonas naphthalenivorans CJ2 365046 core Ramlibacter tataouinensis Ramlibacter tataouinensis TTB310 365659 periphery Streptococcus mitis B6 Streptococcus mitis B6 366394 core Sinorhizobium medicae Sinorhizobium medicae WSM419 366602 core Caulobacter sp. K31 Caulobacter sp. K31 367336 periphery Rhodobacterales bacterium HTCC2255 Rhodobacterales bacterium HTCC2255 367737 core Arcobacter butzleri Arcobacter butzleri RM4018 367775 core Cryptococcus gattii Cryptococcus gattii WM276 367928 core Bifidobacterium adolescentis Bifidobacterium adolescentis ATCC 15703 368407 core Methanoculleus marisnigri Methanoculleus marisnigri JR1 368408 core Thermofilum pendens Thermofilum pendens Hrk 5 369723 periphery Salinispora tropica Salinispora tropica CNB-440 370354 periphery Entamoeba dispar Entamoeba dispar SAW760 370438 core Pelotomaculum thermopropionicum Pelotomaculum thermopropionicum SI 371731 periphery Rhodobacter sp. SW2 Rhodobacter sp. SW2 372461 periphery Buchnera aphidicola BCc Buchnera aphidicola BCc 373153 periphery Streptococcus pneumoniae D39 Streptococcus pneumoniae D39 373903 core Halothermothrix orenii Halothermothrix orenii H 168 374463 periphery Baumannia cicadellinicola Baumannia cicadellinicola str. Hc (Homalodisca coagulata) 374847 core Korarchaeum cryptofilum Candidatus Korarchaeum cryptofilum OPF8 375286 core Janthinobacterium sp. Marseille Janthinobacterium sp. Marseille 375451 periphery Roseobacter denitrificans Roseobacter denitrificans OCh 114 376619 core Francisella tularensis holarctica Francisella tularensis subsp. holarctica LVS 376686 core Flavobacterium johnsoniae Flavobacterium johnsoniae UW101 377431 periphery Chlorobium ferrooxidans Chlorobium ferrooxidans DSM 13031 377629 core Teredinibacter turnerae Teredinibacter turnerae T7901 378753 core Kocuria rhizophila Kocuria rhizophila DC2201 378806 core Stigmatella aurantiaca Stigmatella aurantiaca DW4/3-1 379066 core Gemmatimonas aurantiaca Gemmatimonas aurantiaca T-27 379508 core Lodderomyces elongisporus Lodderomyces elongisporus NRRL YB 4239 379731 periphery Pseudomonas stutzeri Pseudomonas stutzeri A1501 380394 core Acidithiobacillus ferrooxidans ATCC53993 Acidithiobacillus ferrooxidans ATCC 53993 380703 periphery Aeromonas hydrophila Aeromonas hydrophila subsp. hydrophila ATCC 7966 380749 core Hydrogenobaculum sp. Y04AAS1 Hydrogenobaculum sp. Y04AAS1 381046 periphery Lachancea thermotolerans Lachancea thermotolerans 381666 core Ralstonia eutropha H16 Ralstonia eutropha H16 381764 core Fervidobacterium nodosum Fervidobacterium nodosum Rt17-B1 382245 periphery Aeromonas salmonicida Aeromonas salmonicida subsp. salmonicida A449 382464 periphery Verrucomicrobiae bacterium DG1235 Verrucomicrobiae bacterium DG1235 382638 periphery Helicobacter acinonychis Helicobacter acinonychis str. Sheeba 382640 periphery Bartonella tribocorum Bartonella tribocorum CIP 105476 383372 core Roseiflexus castenholzii Roseiflexus castenholzii DSM 13941 383407 core Xanthomonas oryzae Xanthomonas oryzae pv. oryzicola BLS256 383631 periphery Methylophilales bacterium HTCC2181 Methylophilales bacterium HTCC2181 384616 core Pyrobaculum islandicum Pyrobaculum islandicum DSM 4184 384676 core Pseudomonas entomophila Pseudomonas entomophila L48 384765 core Labrenzia aggregata Labrenzia aggregata IAM 12614 386043 periphery Listeria welshimeri Listeria welshimeri serovar 6b str. SLCC5334 386415 periphery Clostridium novyi Clostridium novyi NT 387092 core Nitratiruptor sp. SB1552 Nitratiruptor sp. SB155-2 387093 core Sulfurovum sp. NBC371 Sulfurovum sp. NBC37-1 387344 periphery Lactobacillus brevis Lactobacillus brevis ATCC 367 387662 core Carsonella ruddii Candidatus Carsonella ruddii PV 388399 core Sagittula stellata Sagittula stellata E-37 388400 periphery Bacillus sp. B14905 Bacillus sp. B14905 388401 periphery Rhodobacteraceae bacterium HTCC2150 Rhodobacteraceae bacterium HTCC2150 388413 core Algoriphagus sp. PR1 Algoriphagus sp. PR1 388739 periphery Roseobacter sp. SK20926 Roseobacter sp. SK209-2-6 388919 periphery Streptococcus sanguinis SK36 Streptococcus sanguinis SK36 390235 periphery Pseudomonas putida W619 Pseudomonas putida W619 390236 periphery Borrelia afzelii Borrelia afzelii PKo 390333 periphery Lactobacillus delbrueckii Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 390874 periphery Thermotoga petrophila Thermotoga petrophila RKU-1 391008 periphery Stenotrophomonas maltophilia R5513 Stenotrophomonas maltophilia R551-3 391009 core Thermosipho melanesiensis Thermosipho melanesiensis BI429 391037 core Salinispora arenicola Salinispora arenicola CNS-205 391038 periphery Burkholderia phymatum Burkholderia phymatum STM815 391165 core Granulibacter bethesdensis Granulibacter bethesdensis CGDNIH1 391295 periphery Streptococcus suis Streptococcus suis 05ZYH33 391574 periphery Vibrionales bacterium SWAT3 Vibrionales bacterium SWAT-3 391587 core Kordia algicida Kordia algicida OT-1 391589 periphery Roseobacter sp. GAI101 Roseobacter sp. GAI101 391591 periphery Vibrio shilonii Vibrio shilonii AK1 391592 core Caminibacter mediatlanticus Caminibacter mediatlanticus TB-2 391593 periphery Roseobacter sp. CCS2 Roseobacter sp. CCS2 391595 periphery Roseobacter litoralis Roseobacter litoralis Och 149 391596 core Pedobacter sp. BAL39 Pedobacter sp. BAL39 391597 core Limnobacter sp. MED105 Limnobacter sp. MED105 391598 periphery Flavobacteria bacterium BAL38 Flavobacteria bacterium BAL38 391600 core Brevundimonas sp. BAL3 Brevundimonas sp. BAL3 391603 periphery Flavobacteriales bacterium ALC1 Flavobacteriales bacterium ALC-1 391612 periphery Cyanothece sp. CCY0110 Cyanothece sp. CCY0110 391613 core Roseovarius sp. TM1035 Roseovarius sp. TM1035 391615 periphery gamma proteobacterium HTCC5015 gamma proteobacterium HTCC5015 391616 periphery Octadecabacter antarcticus 238 Octadecabacter antarcticus 238 391619 core Phaeobacter gallaeciensis Phaeobacter gallaeciensis DSM 17395 391623 periphery Thermococcus barophilus Thermococcus barophilus MP 391624 core Oceanibulbus indolifex Oceanibulbus indolifex HEL-45 391625 core Plesiocystis pacifica Plesiocystis pacifica SIR-1 391626 core Octadecabacter antarcticus 307 Octadecabacter antarcticus 307 391735 core Verminephrobacter eiseniae Verminephrobacter eiseniae EF01-2 391896 periphery Rickettsia bellii Rickettsia bellii OSU 85-389 392499 periphery Sphingomonas wittichii Sphingomonas wittichii RW1 392500 periphery Shewanella woodyi Shewanella woodyi ATCC 51908 393305 periphery Yersinia enterocolitica Yersinia enterocolitica subsp. enterocolitica 8081 393480 periphery Fusobacterium nucleatum polymorphum Fusobacterium nucleatum subsp. polymorphum ATCC 10953 393595 periphery Alcanivorax borkumensis Alcanivorax borkumensis SK2 394221 core Maricaulis maris Maricaulis maris MCS10 394503 periphery Clostridium cellulolyticum Clostridium cellulolyticum H10 395019 periphery Burkholderia multivorans Burkholderia multivorans ATCC 17616 395492 periphery Rhizobium leguminosarum trifolii Rhizobium leguminosarum bv. trifolii WSM2304 395494 core Gallionella capsiferriformans Gallionella capsiferriformans ES-2 395495 core Leptothrix cholodnii Leptothrix cholodnii SP-6 395961 periphery Cyanothece sp. PCC7425 Cyanothece sp. PCC 7425 395963 core Beijerinckia indica Beijerinckia indica subsp. indica ATCC 9039 395965 core Methylocella silvestris Methylocella silvestris BL2 396513 periphery Staphylococcus carnosus Staphylococcus carnosus subsp. carnosus TM300 396588 periphery Thioalkalivibrio sulfidophilus Thioalkalivibrio sulfidophilus HL-EbGr7 396595 core Thioalkalivibrio sp. K90mix Thioalkalivibrio sp. K90mix 397945 core Acidovorax citrulli Acidovorax citrulli AAC00-1 397948 core Caldivirga maquilingensis Caldivirga maquilingensis IC-167 398511 periphery Bacillus pseudofirmus Bacillus pseudofirmus OF4 398513 periphery Bifidobacterium bifidum Bifidobacterium bifidum NCIMB 41171 398527 periphery Burkholderia phytofirmans Burkholderia phytofirmans PsJN 398578 core Delftia acidovorans Delftia acidovorans SPH-1 398579 periphery Shewanella pealeana Shewanella pealeana ATCC 700345 398580 core Dinoroseobacter shibae Dinoroseobacter shibae DFL 12 398720 core Leeuwenhoekiella blandensis Leeuwenhoekiella blandensis MED217 398767 periphery Geobacter lovleyi Geobacter lovleyi SZ 399549 periphery Metallosphaera sedula Metallosphaera sedula DSM 5348 399550 core Staphylothermus marinus Staphylothermus marinus F1 399739 periphery Pseudomonas mendocina ymp Pseudomonas mendocina ymp 399741 core Serratia proteamaculans Serratia proteamaculans 568 399742 core Enterobacter sp. 638 Enterobacter sp. 638 399795 core Comamonas testosteroni KF1 Comamonas testosteroni KF-1 400668 core Marinomonas sp. MWYL1 Marinomonas sp. MWYL1 400682 core Amphimedon queenslandica Amphimedon queenslandica 401053 core Terriglobus saanensis Terriglobus saanensis SP1PR4 401473 periphery Bifidobacterium dentium Bifidobacterium dentium Bd1 401526 core Thermosinus carboxydivorans Thermosinus carboxydivorans Nor1 402612 periphery Flavobacterium psychrophilum Flavobacterium psychrophilum JIP02/86 402626 periphery Ralstonia pickettii Ralstonia pickettii 12J 402676 periphery Schizosaccharomyces japonicus Schizosaccharomyces japonicus yFS275 402880 periphery Methanococcus maripaludis C5 Methanococcus maripaludis C5 402881 core Parvibaculum lavamentivorans Parvibaculum lavamentivorans DS-1 403833 core Petrotoga mobilis Petrotoga mobilis SJ95 404380 periphery Geobacter bemidjiensis Geobacter bemidjiensis Bem 404589 periphery Anaeromyxobacter sp. Fw1095 Anaeromyxobacter sp. Fw109-5 405566 periphery Lactobacillus helveticus Lactobacillus helveticus DPC 4571 405948 core Saccharopolyspora erythraea Saccharopolyspora erythraea NRRL 2338 406124 periphery Bacillus sp. m313 Bacillus sp. m3-13 406327 periphery Methanococcus vannielii Methanococcus vannielii SB 406817 periphery Xenorhabdus nematophila Xenorhabdus nematophila ATCC 19061 406818 core Xenorhabdus bovienii Xenorhabdus bovienii SS-2004 408672 periphery Nocardioidaceae bacterium Broad1 Nocardioidaceae bacterium Broad-1 410358 core Methanocorpusculum labreanum Methanocorpusculum labreanum Z 410359 periphery Pyrobaculum calidifontis Pyrobaculum calidifontis JCM 11548 411154 core Gramella forsetii Gramella forsetii KT0803 411459 periphery Ruminococcus obeum ATCC29174 Ruminococcus obeum ATCC 29174 411460 periphery Ruminococcus torques ATCC27756 Ruminococcus torques ATCC 27756 411461 periphery Dorea formicigenerans Dorea formicigenerans ATCC 27755 411462 core Dorea longicatena Dorea longicatena DSM 13814 411463 periphery Eubacterium ventriosum Eubacterium ventriosum ATCC 27560 411464 periphery Desulfovibrio piger Desulfovibrio piger ATCC 29098 411465 periphery Parvimonas micra Parvimonas micra ATCC 33270 411466 periphery Actinomyces odontolyticus Actinomyces odontolyticus ATCC 17982 411467 core Pseudoflavonifractor capillosus Pseudoflavonifractor capillosus ATCC 29799 411468 periphery Clostridium scindens Clostridium scindens ATCC 35704 411469 periphery Eubacterium hallii Eubacterium hallii DSM 3353 411470 periphery Ruminococcus gnavus Ruminococcus gnavus ATCC 29149 411471 core Subdoligranulum variabile Subdoligranulum variabile DSM 15176 411474 periphery Coprococcus eutactus Coprococcus eutactus ATCC 27759 411476 periphery Bacteroides ovatus Bacteroides ovatus ATCC 8483 411477 core Parabacteroides merdae Parabacteroides merdae ATCC 43184 411483 periphery Faecalibacterium prausnitzii A2165 Faecalibacterium prausnitzii A2-165 411489 periphery Clostridium sp. L250 Clostridium sp. L2-50 411490 core Anaerostipes caccae Anaerostipes caccae DSM 14662 411684 core Hoeflea phototrophica Hoeflea phototrophica DFL-43 411901 periphery Bacteroides caccae Bacteroides caccae ATCC 43185 411902 periphery Clostridium bolteae Clostridium bolteae ATCC BAA-613 411903 periphery Collinsella aerofaciens Collinsella aerofaciens ATCC 25986 412030 periphery Paramecium tetraurelia Paramecium tetraurelia strain d4 2 412133 periphery Trichomonas vaginalis G3 Trichomonas vaginalis G3 412419 periphery Borrelia duttonii Borrelia duttonii Ly 412597 periphery Paracoccus sp. TRP Paracoccus sp. TRP 412965 periphery Vesicomyosocius okutanii Candidatus Vesicomyosocius okutanii HA 413404 periphery Ruthia magnifica Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) 414684 periphery Rhodospirillum centenum Rhodospirillum centenum SW 415426 core Hyperthermus butylicus Hyperthermus butylicus DSM 5456 416269 core Actinobacillus pleuropneumoniae 5b Actinobacillus pleuropneumoniae serovar 5b str. L20 416348 core Halorubrum lacusprofundi Halorubrum lacusprofundi ATCC 49239 416591 core Thermotoga lettingae Thermotoga lettingae TMO 416870 core Lactococcus lactis cremoris Lactococcus lactis subsp. cremoris MG1363 419610 core Methylobacterium extorquens PA1 Methylobacterium extorquens PA1 419665 periphery Methanococcus aeolicus Methanococcus aeolicus Nankai-3 419947 periphery Mycobacterium tuberculosis H37Ra Mycobacterium tuberculosis H37Ra 420245 periphery Leishmania braziliensis Leishmania braziliensis MHOM BR 75 M2904 420246 periphery Geobacillus thermodenitrificans Geobacillus thermodenitrificans NG80-2 420247 periphery Methanobrevibacter smithii Methanobrevibacter smithii ATCC 35061 420336 core Epulopiscium sp. NtB Epulopiscium sp. N.t. morphotype B 420662 core Methylibium petroleiphilum Methylibium petroleiphilum PM1 420890 periphery Lactococcus garvieae Lactococcus garvieae Lg2 423536 periphery Perkinsus marinus Perkinsus marinus ATCC 50983 425104 periphery Shewanella sediminis Shewanella sediminis HAW-EB3 425265 periphery Malassezia globosa Malassezia globosa CBS 7966 426114 core Thiomonas sp. 3As Thiomonas sp. 3As 426117 periphery Methylobacterium sp. 446 Methylobacterium sp. 4-46 426355 periphery Methylobacterium radiotolerans Methylobacterium radiotolerans JCM 2831 426368 periphery Methanococcus maripaludis C7 Methanococcus maripaludis C7 426418 core Pyrenophora tritici Pyrenophora tritici repentis Pt 1C BFP 428125 periphery Clostridium leptum Clostridium leptum DSM 753 428126 periphery Clostridium spiroforme Clostridium spiroforme DSM 1552 428127 periphery Eubacterium dolichum Eubacterium dolichum DSM 3991 429009 core Ammonifex degensii Ammonifex degensii KC4 430066 periphery Brucella abortus Brucella abortus S19 431895 core Monosiga brevicollis Monosiga brevicollis MX1 431943 periphery Clostridium kluyveri Clostridium kluyveri DSM 555 431947 periphery Porphyromonas gingivalis ATCC33277 Porphyromonas gingivalis ATCC 33277 434131 core Neorickettsia risticii Neorickettsia risticii str. Illinois 435258 core Leishmania infantum Leishmania infantum JPCM5 435590 periphery Bacteroides vulgatus Bacteroides vulgatus ATCC 8482 435591 periphery Parabacteroides distasonis Parabacteroides distasonis ATCC 8503 435832 periphery Neisseria mucosa C102 Neisseria mucosa C102 435837 periphery Staphylococcus hominis Staphylococcus hominis subsp. hominis C80 435838 periphery Staphylococcus caprae Staphylococcus caprae C87 435842 periphery Streptococcus sp. C150 Streptococcus sp. C150 436017 periphery Ostreococcus lucimarinus Ostreococcus lucimarinus CCE9901 436114 periphery Sulfurihydrogenibium sp. YO3AOP1 Sulfurihydrogenibium sp. YO3AOP1 436308 core Nitrosopumilus maritimus Nitrosopumilus maritimus SCM1 436717 periphery Acinetobacter oleivorans Acinetobacter oleivorans DR1 436907 core Vanderwaltozyma polyspora Vanderwaltozyma polyspora DSM 70294 438753 core Azorhizobium caulinodans Azorhizobium caulinodans ORS 571 439235 core Desulfatibacillum alkenivorans Desulfatibacillum alkenivorans AK-01 439292 periphery Bacillus selenitireducens Bacillus selenitireducens MLS10 439375 core Ochrobactrum anthropi Ochrobactrum anthropi ATCC 49188 439481 core Aciduliprofundum boonei Aciduliprofundum boonei T469 439483 periphery Campylobacterales bacterium Campylobacterales bacterium GD 1 439493 core Pelagibacter sp. HTCC7211 Candidatus Pelagibacter sp. HTCC7211 439496 periphery Rhodobacterales bacterium Y4I Rhodobacterales bacterium Y4I 439497 periphery Ruegeria sp. R11 Ruegeria sp. R11 440497 periphery Lactobacillus jensenii 1153 Lactobacillus jensenii 1153 441375 periphery Cryptosporidium muris Cryptosporidium muris RN66 441620 core Methylobacterium populi Methylobacterium populi BJ001 441768 core Acholeplasma laidlawii Acholeplasma laidlawii PG-8A 441769 core Bacillus coahuilensis Bacillus coahuilensis m4-4 441959 core Talaromyces stipitatus Talaromyces stipitatus ATCC 10500 441960 periphery Penicillium marneffei Penicillium marneffei ATCC 18224 443143 periphery Geobacter sp. M18 Geobacter sp. M18 443144 periphery Geobacter sp. M21 Geobacter sp. M21 443152 periphery Marinobacter algicola Marinobacter algicola DG893 443218 core Amycolicicoccus subflavus Amycolicicoccus subflavus DQS3-9A1 443254 core Marinitoga piezophila Marinitoga piezophila KA3 443255 periphery Streptomyces clavuligerus Streptomyces clavuligerus ATCC 27064 443906 core Clavibacter michiganensis michiganensis Clavibacter michiganensis subsp. michiganensis NCPPB 382 444157 periphery Thermoproteus neutrophilus Thermoproteus neutrophilus V24Sta 444158 periphery Methanococcus maripaludis C6 Methanococcus maripaludis C6 444177 periphery Lysinibacillus sphaericus Lysinibacillus sphaericus C3-41 444612 periphery Rickettsia endosymbiont Rickettsia endosymbiont of Ixodes scapularis 445335 periphery Clostridium botulinum NCTC2916 Clostridium botulinum NCTC 2916 445337 periphery Clostridium botulinum C Eklund Clostridium botulinum C str. Eklund 445932 core Elusimicrobium minutum Elusimicrobium minutum Pei191 445970 periphery Alistipes putredinis Alistipes putredinis DSM 17216 445971 core Anaerofustis stercorihominis Anaerofustis stercorihominis DSM 17244 445972 core Anaerotruncus colihominis Anaerotruncus colihominis DSM 17241 445973 periphery Clostridium bartlettii Clostridium bartlettii DSM 16795 445974 periphery Clostridium ramosum Clostridium ramosum DSM 1402 445975 periphery Collinsella stercoris Collinsella stercoris DSM 13279 445987 periphery Borrelia valaisiana Borrelia valaisiana VS116 446462 core Actinosynnema mirum Actinosynnema mirum DSM 43827 446465 core Brachybacterium faecium Brachybacterium faecium DSM 4810 446466 periphery Cellulomonas flavigena Cellulomonas flavigena DSM 20109 446468 core Nocardiopsis dassonvillei Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 446469 core Sanguibacter keddieii Sanguibacter keddieii DSM 10542 446470 core Stackebrandtia nassauensis Stackebrandtia nassauensis DSM 44728 446471 core Xylanimonas cellulosilytica Xylanimonas cellulosilytica DSM 15894 448385 core Sorangium cellulosum Sorangium cellulosum So ce 56 449447 core Microcystis aeruginosa Microcystis aeruginosa NIES-843 449673 periphery Bacteroides stercoris Bacteroides stercoris ATCC 43183 450851 core Phenylobacterium zucineum Phenylobacterium zucineum HLK1 451757 periphery Clostridium perfringens NCTC8239 Clostridium perfringens NCTC 8239 452471 core Amoebophilus asiaticus Candidatus Amoebophilus asiaticus 5a2 452637 core Opitutus terrae Opitutus terrae PB90-1 452638 periphery Polynucleobacter necessarius necessarius Polynucleobacter necessarius subsp. necessarius STIR1 452652 core Kitasatospora setae Kitasatospora setae KM-6054 452662 periphery Sphingobium japonicum Sphingobium japonicum UT26S 452863 core Arthrobacter chlorophenolicus Arthrobacter chlorophenolicus A6 453591 core Ignicoccus hospitalis Ignicoccus hospitalis KIN4/I 455436 core Glaciecola sp. HTCC2999 Glaciecola sp. HTCC2999 455632 periphery Streptomyces griseus Streptomyces griseus subsp. griseus NBRC 13350 456320 core Methanococcus voltae Methanococcus voltae A3 456442 core Methanoregula boonei Methanoregula boonei 6A8 456481 core Leptospira biflexa Leptospira biflexa serovar Patoc strain Patoc 1 (Paris) 457396 periphery Clostridium sp. 7243FAA Clostridium sp. 7_2_43FAA 457398 periphery Desulfovibrio sp. 31syn3 Desulfovibrio sp. 3_1_syn3 457405 periphery Fusobacterium sp. 71 Fusobacterium sp. 7_1 457412 core Ruminococcus sp. 5139BFAA Ruminococcus sp. 5_1_39BFAA 457421 periphery Clostridiales bacterium Clostridiales bacterium 1_7_47FAA 457424 periphery Bacteroides fragilis 3112 Bacteroides fragilis 3_1_12 457425 periphery Streptomyces albus Streptomyces albus J1074 457427 periphery Streptomyces himastatinicus Streptomyces himastatinicus ATCC 53653 457429 periphery Streptomyces pristinaespiralis Streptomyces pristinaespiralis ATCC 25486 457570 core Natranaerobius thermophilus Natranaerobius thermophilus JW/NM-WN-LF 458233 core Macrococcus caseolyticus Macrococcus caseolyticus JCSC5402 458817 periphery Shewanella halifaxensis Shewanella halifaxensis HAW-EB4 460265 periphery Methylobacterium nodulans Methylobacterium nodulans ORS 2060 463191 periphery Streptomyces sviceus Streptomyces sviceus ATCC 29083 465515 core Micrococcus luteus Micrococcus luteus NCTC 2665 465541 periphery Streptomyces sp. Mg1 Streptomyces sp. Mg1 465817 periphery Erwinia tasmaniensis Erwinia tasmaniensis Et1/99 467200 periphery Streptomyces griseoflavus Streptomyces griseoflavus Tu4000 467661 periphery Rhodobacteraceae bacterium KLH11 Rhodobacteraceae bacterium KLH11 467705 periphery Streptococcus gordonii Streptococcus gordonii str. Challis substr. CH1 469008 periphery Escherichia coli BL21DE3 Escherichia coli BL21(DE3) 469371 core Thermobispora bispora Thermobispora bispora DSM 43833 469378 core Cryptobacterium curtum Cryptobacterium curtum DSM 15641 469381 core Dethiosulfovibrio peptidovorans Dethiosulfovibrio peptidovorans DSM 11002 469382 core Halogeometricum borinquense Halogeometricum borinquense DSM 11551 469383 core Conexibacter woesei Conexibacter woesei DSM 14684 469595 periphery Citrobacter sp. 302 Citrobacter sp. 30_2 469596 core Coprobacillus sp. 291 Coprobacillus sp. 29_1 469606 periphery Fusobacterium sp. 4113 Fusobacterium sp. 4_1_13 469610 periphery Burkholderiales bacterium 1147 Burkholderiales bacterium 1_1_47 469613 periphery Enterobacteriaceae bacterium Enterobacteriaceae bacterium 9_2_54FAA 469615 periphery Fusobacterium gonidiaformans Fusobacterium gonidiaformans ATCC 25563 469616 periphery Fusobacterium mortiferum Fusobacterium mortiferum ATCC 9817 469617 periphery Fusobacterium ulcerans Fusobacterium ulcerans ATCC 49185 469618 periphery Fusobacterium varium Fusobacterium varium ATCC 27725 470145 periphery Bacteroides coprocola Bacteroides coprocola DSM 17136 470146 periphery Coprococcus comes Coprococcus comes ATCC 27758 471223 periphery Geobacillus sp. WCH70 Geobacillus sp. WCH70 471821 periphery uncultured Tg1 bacterium RsD17 uncultured Termite group 1 bacterium phylotype Rs-D17 471852 core Thermomonospora curvata Thermomonospora curvata DSM 43183 471853 core Beutenbergia cavernae Beutenbergia cavernae DSM 12333 471854 core Dyadobacter fermentans Dyadobacter fermentans DSM 18053 471855 core Slackia heliotrinireducens Slackia heliotrinireducens DSM 20476 471856 core Jonesia denitrificans Jonesia denitrificans DSM 20603 471857 core Saccharomonospora viridis Saccharomonospora viridis DSM 43017 471870 periphery Bacteroides intestinalis Bacteroides intestinalis DSM 17393 471874 core Providencia stuartii Providencia stuartii ATCC 25827 471875 periphery Ruminococcus lactaris Ruminococcus lactaris ATCC 29176 471881 periphery Proteus penneri Proteus penneri ATCC 35198 472759 core Nitrosococcus halophilus Nitrosococcus halophilus Nc4 476272 periphery Blautia hydrogenotrophica Blautia hydrogenotrophica DSM 10507 477974 core Desulforudis audaxviator Candidatus Desulforudis audaxviator MP104C 478749 periphery Marvinbryantia formatexigens Marvinbryantia formatexigens DSM 14469 478801 core Kytococcus sedentarius Kytococcus sedentarius DSM 20547 479431 core Nakamurella multipartita Nakamurella multipartita DSM 44233 479432 core Streptosporangium roseum Streptosporangium roseum DSM 43021 479433 core Catenulispora acidiphila Catenulispora acidiphila DSM 44928 479434 core Sphaerobacter thermophilus Sphaerobacter thermophilus DSM 20745 479435 core Kribbella flavida Kribbella flavida DSM 17836 479436 periphery Veillonella parvula Veillonella parvula DSM 2008 479437 core Eggerthella lenta Eggerthella lenta DSM 2243 481448 core Methylacidiphilum infernorum Methylacidiphilum infernorum V4 481743 periphery Paenibacillus sp. Y412MC10 Paenibacillus sp. Y412MC10 481805 periphery Escherichia coli ATCC8739 Escherichia coli ATCC 8739 483215 periphery Bacteroides finegoldii Bacteroides finegoldii DSM 17565 483216 core Bacteroides eggerthii Bacteroides eggerthii DSM 20697 483218 core Bacteroides pectinophilus Bacteroides pectinophilus ATCC 43243 483219 core Myxococcus fulvus Myxococcus fulvus HW-1 484018 periphery Bacteroides plebeius Bacteroides plebeius DSM 17135 484019 periphery Thermosipho africanus Thermosipho africanus TCF52B 484022 periphery Francisella philomiragia Francisella philomiragia subsp. philomiragia ATCC 25017 485913 core Ktedonobacter racemifer Ktedonobacter racemifer DSM 44963 485914 core Halomicrobium mukohataei Halomicrobium mukohataei DSM 12286 485915 core Desulfohalobium retbaense Desulfohalobium retbaense DSM 5692 485916 periphery Desulfotomaculum acetoxidans Desulfotomaculum acetoxidans DSM 771 485917 periphery Pedobacter heparinus Pedobacter heparinus DSM 2366 485918 core Chitinophaga pinensis Chitinophaga pinensis DSM 2588 486041 core Laccaria bicolor Laccaria bicolor S238N H82 487796 periphery Flavobacteria bacterium MS0242A Flavobacteria bacterium MS024-2A 487797 periphery Flavobacteria bacterium MS0243C Flavobacteria bacterium MS024-3C 488538 core Puniceispirillum marinum Candidatus Puniceispirillum marinum IMCC1322 489653 periphery Neisseria lactamica Neisseria lactamica 020-06 489825 core Moorea producta Moorea producta 3L 490899 core Desulfurococcus kamchatkensis Desulfurococcus kamchatkensis 1221n 491915 core Anoxybacillus flavithermus Anoxybacillus flavithermus WK1 491916 periphery Rhizobium etli CIAT652 Rhizobium etli CIAT 652 491952 periphery Marinomonas posidonica Marinomonas posidonica IVIA-Po-181 496833 periphery Mycoplasma fermentans Mycoplasma fermentans PG18 497964 core Chthoniobacter flavus Chthoniobacter flavus Ellin428 497965 periphery Cyanothece sp. PCC7822 Cyanothece sp. PCC 7822 498211 core Cellvibrio japonicus Cellvibrio japonicus Ueda107 498217 core Edwardsiella tarda Edwardsiella tarda EIB202 498742 core Borrelia spielmanii Borrelia spielmanii A14S 498761 core Heliobacterium modesticaldum Heliobacterium modesticaldum Ice1 498848 core Thermus aquaticus Thermus aquaticus Y51MC23 499177 periphery Clostridium sticklandii Clostridium sticklandii DSM 519 499229 core Tepidanaerobacter sp. Re1 Tepidanaerobacter sp. Re1 500485 core Penicillium chrysogenum Penicillium chrysogenum Wisconsin 54 1255 500633 periphery Clostridium hiranonis Clostridium hiranonis DSM 13275 500635 core Mitsuokella multacida Mitsuokella multacida DSM 20544 500637 periphery Providencia rustigianii Providencia rustigianii DSM 4541 500639 periphery Enterobacter cancerogenus Enterobacter cancerogenus ATCC 35316 500640 periphery Citrobacter youngae Citrobacter youngae ATCC 29220 501479 core Citreicella sp. SE45 Citreicella sp. SE45 502025 core Haliangium ochraceum Haliangium ochraceum DSM 14365 502347 core Escherichia albertii Escherichia albertii TW07627 502558 periphery Eggerthella sp. YY7918 Eggerthella sp. YY7918 502779 core Paracoccidioides sp. lutzii Paracoccidioides sp. lutzii Pb01 504472 core Spirosoma linguale Spirosoma linguale DSM 74 504474 periphery Corynebacterium urealyticum Corynebacterium urealyticum DSM 7109 504728 core Meiothermus ruber Meiothermus ruber DSM 1279 504832 core Oligotropha carboxidovorans Oligotropha carboxidovorans OM5 506534 core Rheinheimera sp. A13L Rheinheimera sp. A13L 509190 periphery Caulobacter segnis Caulobacter segnis ATCC 21756 509191 core Acetivibrio cellulolyticus Acetivibrio cellulolyticus CD2 511062 core Oceanimonas sp. GK1 Oceanimonas sp. GK1 511145 core Escherichia coli K12 MG1655 Escherichia coli str. K-12 substr. MG1655 511437 periphery Lactobacillus buchneri NRRLB30929 Lactobacillus buchneri NRRL B-30929 511680 periphery Butyrivibrio crossotus Butyrivibrio crossotus DSM 2876 511995 core Azobacteroides pseudotrichonymphae Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 512564 periphery Mycoplasma crocodyli Mycoplasma crocodyli MP145 513049 core Arthrospira maxima Arthrospira maxima CS-328 515618 core Riesia pediculicola Candidatus Riesia pediculicola USDA 515620 core Eubacterium eligens Eubacterium eligens ATCC 27750 515622 core Butyrivibrio proteoclasticus Butyrivibrio proteoclasticus B316 515635 core Dictyoglomus turgidum Dictyoglomus turgidum DSM 6724 515849 core Podospora anserina Podospora anserina S mat 517417 periphery Chlorobaculum parvum Chlorobaculum parvum NCIB 8327 517418 core Chloroherpeton thalassium Chloroherpeton thalassium ATCC 35110 517433 periphery Pantoea sp. aB Pantoea sp. aB 517722 periphery Citromicrobium sp. JLT1363 Citromicrobium sp. JLT1363 518635 periphery Bifidobacterium angulatum Bifidobacterium angulatum DSM 20098 = JCM 7096 518637 periphery Eubacterium biforme Eubacterium biforme DSM 3989 518766 core Rhodothermus marinus Rhodothermus marinus DSM 4252 519441 core Streptobacillus moniliformis Streptobacillus moniliformis DSM 12112 519442 core Halorhabdus utahensis Halorhabdus utahensis DSM 12940 520999 periphery Providencia alcalifaciens Providencia alcalifaciens DSM 30120 521000 periphery Providencia rettgeri Providencia rettgeri DSM 1131 521003 core Collinsella intestinalis Collinsella intestinalis DSM 13280 521010 periphery Borrelia bissettii Borrelia bissettii DN127 521011 core Methanosphaerula palustris Methanosphaerula palustris E1-9c 521045 core Kosmotoga olearia Kosmotoga olearia TBF 19.5.1 521095 periphery Atopobium parvulum Atopobium parvulum DSM 20469 521096 core Tsukamurella paurometabola Tsukamurella paurometabola DSM 20162 521097 periphery Capnocytophaga ochracea DSM7271 Capnocytophaga ochracea DSM 7271 521098 core Alicyclobacillus acidocaldarius DSM446 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 521460 core Caldicellulosiruptor bescii Caldicellulosiruptor bescii DSM 6725 521674 core Planctomyces limnophilus Planctomyces limnophilus DSM 3776 522306 core Accumulibacter phosphatis Candidatus Accumulibacter phosphatis clade IIA str. UW-1 522373 core Stenotrophomonas maltophilia K279a Stenotrophomonas maltophilia K279a 522772 core Denitrovibrio acetiphilus Denitrovibrio acetiphilus DSM 12809 523791 core Kangiella koreensis Kangiella koreensis DSM 16069 523794 core Leptotrichia buccalis Leptotrichia buccalis C-1013-b 523846 core Methanothermus fervidus Methanothermus fervidus DSM 2088 523850 core Thermococcus onnurineus Thermococcus onnurineus NA1 525146 periphery Desulfovibrio desulfuricans ATCC27774 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 525244 periphery Acinetobacter sp. ATCC27244 Acinetobacter sp. ATCC 27244 525245 periphery Actinomyces coleocanis Actinomyces coleocanis DSM 15436 525246 periphery Actinomyces urogenitalis Actinomyces urogenitalis DSM 15434 525254 periphery Anaerococcus lactolyticus Anaerococcus lactolyticus ATCC 51172 525255 periphery Anaerococcus tetradius Anaerococcus tetradius ATCC 35098 525256 periphery Atopobium vaginae DSM15829 Atopobium vaginae DSM 15829 525257 core Chryseobacterium gleum Chryseobacterium gleum ATCC 35910 525260 periphery Corynebacterium accolens Corynebacterium accolens ATCC 49725 525263 periphery Corynebacterium lipophiloflavum Corynebacterium lipophiloflavum DSM 44291 525264 periphery Corynebacterium pseudogenitalium Corynebacterium pseudogenitalium ATCC 33035 525268 periphery Corynebacterium striatum Corynebacterium striatum ATCC 6940 525282 periphery Finegoldia magna ATCC53516 Finegoldia magna ATCC 53516 525309 periphery Lactobacillus antri Lactobacillus antri DSM 16041 525318 periphery Lactobacillus buchneri ATCC11577 Lactobacillus buchneri ATCC 11577 525365 periphery Lactobacillus ultunensis Lactobacillus ultunensis DSM 16047 525366 periphery Lactobacillus vaginalis Lactobacillus vaginalis ATCC 49540 525367 periphery Listeria grayi Listeria grayi DSM 20601 525373 periphery Sphingobacterium spiritivorum Sphingobacterium spiritivorum ATCC 33861 525378 periphery Staphylococcus epidermidis M23864W1 Staphylococcus epidermidis M23864:W1 525379 periphery Streptococcus equinus Streptococcus equinus ATCC 9812 525897 core Desulfomicrobium baculatum Desulfomicrobium baculatum DSM 4028 525898 core Sulfurospirillum deleyianum Sulfurospirillum deleyianum DSM 6946 525903 core Thermanaerovibrio acidaminovorans Thermanaerovibrio acidaminovorans DSM 6589 525904 core Thermobaculum terrenum Thermobaculum terrenum ATCC BAA-798 525909 core Acidimicrobium ferrooxidans Acidimicrobium ferrooxidans DSM 10331 525919 periphery Anaerococcus prevotii DSM20548 Anaerococcus prevotii DSM 20548 526218 core Sebaldella termitidis Sebaldella termitidis ATCC 33386 526221 periphery Verticillium albo Verticillium albo atrum VaMs.102 526222 periphery Desulfovibrio salexigens Desulfovibrio salexigens DSM 2638 526224 periphery Brachyspira murdochii Brachyspira murdochii DSM 12563 526225 core Geodermatophilus obscurus Geodermatophilus obscurus DSM 43160 526226 periphery Gordonia bronchialis Gordonia bronchialis DSM 43247 526227 periphery Meiothermus silvanus Meiothermus silvanus DSM 9946 526988 periphery Bacillus cereus Rock418 Bacillus cereus Rock4-18 528354 periphery Neisseria gonorrhoeae MS11 Neisseria gonorrhoeae MS11 528357 periphery Neisseria gonorrhoeae PID241 Neisseria gonorrhoeae PID24-1 529507 core Proteus mirabilis Proteus mirabilis HI4320 529709 periphery Pyrococcus yayanosii Pyrococcus yayanosii CH1 530564 core Pirellula staleyi Pirellula staleyi DSM 6068 531844 periphery Flavobacteriaceae bacterium 351910 Flavobacteriaceae bacterium 3519-10 533240 core Cylindrospermopsis raciborskii Cylindrospermopsis raciborskii CS-505 533247 core Raphidiopsis brookii Raphidiopsis brookii D9 535289 periphery Acidovorax ebreus Acidovorax ebreus TPSY 535722 core Arthroderma gypseum Arthroderma gypseum CBS 118893 536019 periphery Mesorhizobium opportunistum Mesorhizobium opportunistum WSM2075 536227 periphery Clostridium carboxidivorans Clostridium carboxidivorans P7 536233 periphery Clostridium botulinum E1 Beluga Clostridium botulinum E1 str. BoNT E Beluga 537007 core Blautia hansenii Blautia hansenii DSM 20583 537011 periphery Prevotella copri Prevotella copri DSM 18205 537013 periphery Clostridium methylpentosum Clostridium methylpentosum DSM 5476 537021 core Liberibacter asiaticus Candidatus Liberibacter asiaticus str. psy62 537970 periphery Helicobacter canadensis Helicobacter canadensis MIT 98-5491 537971 periphery Helicobacter cinaedi Helicobacter cinaedi CCUG 18818 537972 periphery Helicobacter pullorum Helicobacter pullorum MIT 98-5489 543526 core Haloterrigena turkmenica Haloterrigena turkmenica DSM 5511 543728 periphery Variovorax paradoxus S110 Variovorax paradoxus S110 543734 periphery Lactobacillus casei Lactobacillus casei BL23 545693 periphery Bacillus megaterium Bacillus megaterium QM B1551 545694 periphery Treponema primitia Treponema primitia ZAS-2 545695 periphery Treponema azotonutricium Treponema azotonutricium ZAS-9 545696 core Holdemania filiformis Holdemania filiformis DSM 12042 546262 periphery Neisseria cinerea Neisseria cinerea ATCC 14685 546263 periphery Neisseria elongata Neisseria elongata subsp. glycolytica ATCC 29315 546264 periphery Neisseria flavescens NRL30031 Neisseria flavescens NRL30031/H210 546266 periphery Neisseria mucosa ATCC25996 Neisseria mucosa ATCC 25996 546267 periphery Neisseria polysaccharea Neisseria polysaccharea ATCC 43768 546268 periphery Neisseria subflava Neisseria subflava NJ9703 546269 core Filifactor alocis Filifactor alocis ATCC 35896 546270 periphery Gemella haemolysans ATCC10379 Gemella haemolysans ATCC 10379 546271 periphery Selenomonas sputigena Selenomonas sputigena ATCC 35185 546273 periphery Veillonella dispar Veillonella dispar ATCC 17748 546274 core Eikenella corrodens Eikenella corrodens ATCC 23834 546275 periphery Fusobacterium periodonticum Fusobacterium periodonticum ATCC 33693 546414 periphery Deinococcus deserti Deinococcus deserti VCD115 547042 periphery Bacteroides coprophilus Bacteroides coprophilus DSM 18228 547043 periphery Bifidobacterium pseudocatenulatum Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 547045 periphery Neisseria sicca Neisseria sicca ATCC 29256 547558 core Methanohalophilus mahii Methanohalophilus mahii DSM 5219 547559 core Natrialba magadii Natrialba magadii ATCC 43099 548476 periphery Corynebacterium aurimucosum Corynebacterium aurimucosum ATCC 700975 548477 core Corynebacterium glucuronolyticum Corynebacterium glucuronolyticum ATCC 51867 550540 core Ferrimonas balearica Ferrimonas balearica DSM 9799 551115 core Nostoc azollae Nostoc azollae 0708 552396 periphery Erysipelotrichaceae bacterium 5254FAA Erysipelotrichaceae bacterium 5_2_54FAA 552398 periphery Ruminococcaceae bacterium D16 Ruminococcaceae bacterium D16 552531 periphery Bifidobacterium animalis Bifidobacterium animalis subsp. lactis BB-12 552811 core Dehalogenimonas lykanthroporepellens Dehalogenimonas lykanthroporepellens BL-DC-9 553171 periphery Prevotella bivia Prevotella bivia JCVIHMP010 553174 periphery Prevotella melaninogenica Prevotella melaninogenica ATCC 25845 553175 periphery Porphyromonas endodontalis Porphyromonas endodontalis ATCC 35406 553177 periphery Capnocytophaga sputigena Capnocytophaga sputigena ATCC 33612 553178 periphery Capnocytophaga gingivalis Capnocytophaga gingivalis ATCC 33624 553184 periphery Atopobium rimae Atopobium rimae ATCC 49626 553190 core Gardnerella vaginalis 40905 Gardnerella vaginalis 409-05 553204 periphery Corynebacterium amycolatum Corynebacterium amycolatum SK46 553207 periphery Corynebacterium matruchotii Corynebacterium matruchotii ATCC 14266 553217 core Enhydrobacter aerosaccus Enhydrobacter aerosaccus SK60 553218 periphery Campylobacter rectus Campylobacter rectus RM3267 553219 periphery Campylobacter showae Campylobacter showae RM3277 553220 periphery Campylobacter gracilis Campylobacter gracilis RM3268 553480 periphery Photorhabdus asymbiotica Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 553973 periphery Clostridium hylemonae Clostridium hylemonae DSM 15053 554155 periphery Arthroderma otae Arthroderma otae CBS 113480 555079 core Thermosediminibacter oceani Thermosediminibacter oceani DSM 16646 555088 core Dethiobacter alkaliphilus Dethiobacter alkaliphilus AHT 1 555217 core Zymomonas mobilis mobilis Zymomonas mobilis subsp. mobilis ATCC 10988 555778 core Halothiobacillus neapolitanus Halothiobacillus neapolitanus c2 555779 core Desulfonatronospira thiodismutans Desulfonatronospira thiodismutans ASO3-1 556261 periphery Clostridium sp. D5 Clostridium sp. D5 556263 core Fusobacterium sp. D12 Fusobacterium sp. D12 556267 periphery Helicobacter winghamensis Helicobacter winghamensis ATCC BAA-430 556268 periphery Oxalobacter formigenes HOxBLS Oxalobacter formigenes HOxBLS 556269 core Oxalobacter formigenes OXCC13 Oxalobacter formigenes OXCC13 557598 core Laribacter hongkongensis Laribacter hongkongensis HLHK9 557599 periphery Mycobacterium kansasii Mycobacterium kansasii ATCC 12478 557723 periphery Haemophilus parasuis Haemophilus parasuis SH0165 559298 core Ajellomyces dermatitidis Ajellomyces dermatitidis SLH14081 559305 core Trichophyton rubrum Trichophyton rubrum CBS 118892 561007 periphery Mycobacterium abscessus Mycobacterium abscessus ATCC 19977 561177 periphery Anaerococcus hydrogenalis Anaerococcus hydrogenalis DSM 7454 561180 periphery Bifidobacterium gallicum Bifidobacterium gallicum DSM 20093 561229 periphery Dickeya zeae Dickeya zeae Ech1591 561230 periphery Pectobacterium carotovorum Pectobacterium carotovorum subsp. carotovorum PC1 561231 periphery Pectobacterium wasabiae Pectobacterium wasabiae WPP163 562970 core Kyrpidia tusciae Kyrpidia tusciae DSM 2912 562981 periphery Gemella haemolysans M341 Gemella haemolysans M341 562982 periphery Gemella morbillorum Gemella morbillorum M424 562983 core Gemella sanguinis Gemella sanguinis M325 563008 periphery Prevotella oris Prevotella oris C735 563037 periphery Streptococcus sp. M143 Streptococcus sp. M143 563038 periphery Streptococcus sp. M334 Streptococcus sp. M334 563040 periphery Sulfurimonas autotrophica Sulfurimonas autotrophica DSM 16294 563192 core Bilophila wadsworthia Bilophila wadsworthia 3_1_6 565034 core Brachyspira hyodysenteriae Brachyspira hyodysenteriae WA1 565045 periphery gamma proteobacterium NOR51B gamma proteobacterium NOR51-B 565575 periphery Ureaplasma urealyticum Ureaplasma urealyticum serovar 10 str. ATCC 33699 565653 periphery Enterococcus gallinarum Enterococcus gallinarum EG2 565655 periphery Enterococcus casseliflavus Enterococcus casseliflavus EC20 565664 periphery Enterococcus faecium Enterococcus faecium C68 566461 periphery Streptomyces ghanaensis Streptomyces ghanaensis ATCC 14672 566466 periphery gamma proteobacterium NOR53 gamma proteobacterium NOR5-3 568703 periphery Lactobacillus rhamnosus Lactobacillus rhamnosus GG 568816 core Acidaminococcus intestini Acidaminococcus intestini RyC-MR95 568817 periphery Serratia symbiotica Serratia symbiotica str. Cinara cedri 570417 periphery Wolbachia sp. Cq Wolbachia endosymbiont of Culex quinquefasciatus Pel 572263 periphery Mycoplasma conjunctivae Mycoplasma conjunctivae HRC/581 572265 core Hamiltonella defensa Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 572307 periphery Neospora caninum Neospora caninum Liverpool 572477 core Allochromatium vinosum Allochromatium vinosum DSM 180 572478 core Vulcanisaeta distributa Vulcanisaeta distributa DSM 14429 572479 core Halanaerobium praevalens Halanaerobium praevalens DSM 2228 572480 periphery Arcobacter nitrofigilis Arcobacter nitrofigilis DSM 7299 572544 core Ilyobacter polytropus Ilyobacter polytropus DSM 2926 572546 core Archaeoglobus profundus Archaeoglobus profundus DSM 5631 572547 core Aminobacterium colombiense Aminobacterium colombiense DSM 12261 573061 periphery Clostridium cellulovorans Clostridium cellulovorans 743B 573063 periphery Methanocaldococcus infernus Methanocaldococcus infernus ME 573064 core Methanocaldococcus fervens Methanocaldococcus fervens AG86 573065 core Asticcacaulis excentricus Asticcacaulis excentricus CB 48 573234 core Hodgkinia cicadicola Candidatus Hodgkinia cicadicola Dsem 573370 core Desulfovibrio magneticus Desulfovibrio magneticus RS-1 573413 core Spirochaeta smaragdinae Spirochaeta smaragdinae DSM 11293 573569 periphery Francisella sp. TX077308 Francisella sp. TX077308 573729 periphery Myceliophthora thermophila Myceliophthora thermophila ATCC 42464 573826 periphery Candida dubliniensis Candida dubliniensis CD36 574087 core Acetohalobium arabaticum Acetohalobium arabaticum DSM 5501 574556 periphery Anaplasma centrale Anaplasma centrale str. Israel 575540 core Isosphaera pallida Isosphaera pallida ATCC 43644 575564 periphery Acinetobacter sp. RUH2624 Acinetobacter sp. RUH2624 575584 periphery Acinetobacter baumannii Acinetobacter baumannii ATCC 19606 575586 periphery Acinetobacter johnsonii Acinetobacter johnsonii SH046 575587 periphery Acinetobacter junii Acinetobacter junii SH205 575588 periphery Acinetobacter lwoffii Acinetobacter lwoffii SH145 575589 periphery Acinetobacter radioresistens Acinetobacter radioresistens SH164 575590 periphery Bacteroidetes sp. 274 Bacteroidetes oral taxon 274 str. F0058 575593 periphery Lachnospiraceae oral Lachnospiraceae oral taxon 107 str. F0167 575594 periphery Lactobacillus coleohominis Lactobacillus coleohominis 101-4-CHN 575606 periphery Lactobacillus jensenii 272CHN Lactobacillus jensenii 27-2-CHN 575609 periphery Peptoniphilus sp. F0131 Peptoniphilus sp. oral taxon 386 str. F0131 575611 periphery Prevotella buccae Prevotella buccae D17 575614 periphery Prevotella sp. F0039 Prevotella sp. oral taxon 299 str. F0039 575615 periphery Prevotella sp. F0108 Prevotella sp. oral taxon 317 str. F0108 575788 periphery Vibrio splendidus Vibrio splendidus LGP32 577650 core Desulfobulbus propionicus Desulfobulbus propionicus DSM 2032 578455 core Thielavia terrestris Thielavia terrestris NRRL 8126 578458 core Schizophyllum commune Schizophyllum commune H4 8 579137 periphery Methanocaldococcus vulcanius Methanocaldococcus vulcanius M7 579138 periphery Zymomonas mobilis pomaceae Zymomonas mobilis subsp. pomaceae ATCC 29192 579405 core Dickeya dadantii Ech703 Dickeya dadantii Ech703 580327 core Thermoanaerobact. thermosaccharolyticum Thermoanaerobacterium thermosaccharolyticum DSM 571 580331 core Thermoanaerobacter italicus Thermoanaerobacter italicus Ab9 580332 core Sideroxydans lithotrophicus Sideroxydans lithotrophicus ES-1 580340 core Thermovirga lienii Thermovirga lienii DSM 17291 582402 core Hirschia baltica Hirschia baltica ATCC 49814 582744 core Methylovorus glucosetrophus Methylovorus glucosetrophus SIP3-4 582899 periphery Hyphomicrobium denitrificans Hyphomicrobium denitrificans ATCC 51888 583345 periphery Methylotenera mobilis Methylotenera mobilis JLW8 583355 core Coraliomargarita akajimensis Coraliomargarita akajimensis DSM 45221 583356 core Ignisphaera aggregans Ignisphaera aggregans DSM 17230 584708 core Aminomonas paucivorans Aminomonas paucivorans DSM 12260 585198 periphery Mobiluncus curtisii Mobiluncus curtisii subsp. curtisii ATCC 35241 585202 periphery Streptococcus mitis SK321 Streptococcus mitis SK321 585204 periphery Streptococcus mitis SK597 Streptococcus mitis SK597 585394 periphery Roseburia hominis Roseburia hominis A2-183 585501 periphery Oribacterium sinus Oribacterium sinus F0268 585502 periphery Prevotella bergensis Prevotella bergensis DSM 17361 585503 periphery Selenomonas noxia Selenomonas noxia ATCC 43541 585506 periphery Weissella paramesenteroides Weissella paramesenteroides ATCC 33313 585524 periphery Lactobacillus amylolyticus Lactobacillus amylolyticus DSM 11664 585528 periphery Gardnerella vaginalis ATCC14018 Gardnerella vaginalis ATCC 14018 = JCM 11026 585529 periphery Corynebacterium genitalium Corynebacterium genitalium ATCC 33030 585530 core Brevibacterium mcbrellneri Brevibacterium mcbrellneri ATCC 49030 585531 core Aeromicrobium marinum Aeromicrobium marinum DSM 15272 585543 periphery Bacteroides sp. D20 Bacteroides sp. D20 588581 periphery Clostridium papyrosolvens Clostridium papyrosolvens DSM 2782 589865 core Desulfurivibrio alkaliphilus Desulfurivibrio alkaliphilus AHT2 589924 core Ferroglobus placidus Ferroglobus placidus DSM 10642 590409 periphery Dickeya dadantii Ech586 Dickeya dadantii Ech586 590998 core Cellulomonas fimi Cellulomonas fimi ATCC 484 591001 periphery Acidaminococcus fermentans Acidaminococcus fermentans DSM 20731 591019 periphery Staphylothermus hellenicus Staphylothermus hellenicus DSM 12710 591023 periphery Actinobacillus minor 202 Actinobacillus minor 202 591157 periphery Streptomyces sp. SPB78 Streptomyces sp. SPB78 591158 periphery Streptomyces sp. AA4 Streptomyces sp. AA4 591159 periphery Streptomyces viridochromogenes Streptomyces viridochromogenes DSM 40736 591167 periphery Streptomyces flavogriseus Streptomyces flavogriseus ATCC 33331 592010 core Abiotrophia defectiva Abiotrophia defectiva ATCC 49176 592015 core Anaerobaculum hydrogeniformans Anaerobaculum hydrogeniformans ATCC BAA-1850 592026 core Catonella morbi Catonella morbi ATCC 51271 592027 periphery Clostridium botulinum D 1873 Clostridium botulinum D str. 1873 592028 core Dialister invisus Dialister invisus DSM 15470 592031 periphery Eubacterium saphenum Eubacterium saphenum ATCC 49989 592316 core Pantoea sp. At9b Pantoea sp. At-9b 593117 periphery Thermococcus gammatolerans Thermococcus gammatolerans EJ3 593907 periphery Cellvibrio gilvus Cellvibrio gilvus ATCC 13127 595494 core Tolumonas auensis Tolumonas auensis DSM 9187 595499 core Sulcia muelleri SMDSEM Candidatus Sulcia muelleri SMDSEM 595536 core Methylosinus trichosporium Methylosinus trichosporium OB3b 595537 core Variovorax paradoxus EPS Variovorax paradoxus EPS 596151 periphery Desulfovibrio fructosovorans Desulfovibrio fructosovorans JJ 596154 core Alicycliphilus denitrificans Alicycliphilus denitrificans K601 596315 periphery Peptostreptococcus stomatis Peptostreptococcus stomatis DSM 17678 596319 periphery Staphylococcus warneri Staphylococcus warneri L37603 596320 periphery Neisseria flavescens SK114 Neisseria flavescens SK114 596323 periphery Leptotrichia goodfellowii Leptotrichia goodfellowii F0264 596324 core Treponema vincentii Treponema vincentii ATCC 35580 596327 core Porphyromonas uenonis Porphyromonas uenonis 60-3 596328 core Mobiluncus mulieris Mobiluncus mulieris 28-1 596329 core Peptostreptococcus anaerobius Peptostreptococcus anaerobius 653-L 596330 periphery Peptoniphilus lacrimalis Peptoniphilus lacrimalis 315-B 598659 core Nautilia profundicola Nautilia profundicola AmH 600809 periphery Blattabacterium sp. BPLAN Blattabacterium sp. (Periplaneta americana) str. BPLAN 604354 periphery Thermococcus sibiricus Thermococcus sibiricus MM 739 608506 periphery Caldicellulosiruptor obsidiansis Caldicellulosiruptor obsidiansis OB47 608534 core Oribacterium sp. F0262 Oribacterium sp. oral taxon 078 str. F0262 608538 core Hydrogenobacter thermophilus Hydrogenobacter thermophilus TK-6 610130 periphery Clostridium saccharolyticum WM1 Clostridium saccharolyticum WM1 613026 periphery Helicobacter bilis Helicobacter bilis ATCC 43879 619693 periphery Prevotella sp. F0295 Prevotella sp. oral taxon 472 str. F0295 621372 core Paenibacillus sp. D14 Paenibacillus sp. oral taxon 786 str. D14 622312 core Roseburia inulinivorans Roseburia inulinivorans DSM 16841 622637 core Methylocystis sp. ATCC49242 Methylocystis sp. ATCC 49242 626369 periphery Granulicatella elegans Granulicatella elegans ATCC 700633 626418 periphery Burkholderia glumae Burkholderia glumae BGR1 626522 core Prevotella tannerae Prevotella tannerae ATCC 51259 626523 core Shuttleworthia satelles Shuttleworthia satelles DSM 14600 626939 core Phascolarctobacterium succinatutens Phascolarctobacterium succinatutens YIT 12067 627192 core Sphingobium sp. SYK6 Sphingobium sp. SYK-6 629265 periphery Pseudomonas syringae maculicola Pseudomonas syringae pv. maculicola str. ES4326 629741 periphery Kingella oralis Kingella oralis ATCC 51147 632245 periphery Clostridium butyricum Clostridium butyricum E4 str. BoNT E BL5262 632292 periphery Caldicellulosiruptor hydrothermalis Caldicellulosiruptor hydrothermalis 108 632335 periphery Caldicellulosiruptor kristjanssonii Caldicellulosiruptor kristjanssonii 177R1B 632518 periphery Caldicellulosiruptor owensensis Caldicellulosiruptor owensensis OL 632772 periphery Rhodococcus opacus Rhodococcus opacus B4 633131 core Thalassiobium sp. R2A62 Thalassiobium sp. R2A62 633147 core Olsenella uli Olsenella uli DSM 7084 633148 core Thermosphaera aggregans Thermosphaera aggregans DSM 11486 633149 periphery Brevundimonas subvibrioides Brevundimonas subvibrioides ATCC 15264 633697 periphery Eubacterium cellulosolvens Eubacterium cellulosolvens 6 634176 periphery Aggregatibacter aphrophilus Aggregatibacter aphrophilus NJ8700 634177 periphery Gluconacetobacter xylinus Gluconacetobacter xylinus NBRC 3288 634452 core Acetobacter pasteurianus Acetobacter pasteurianus IFO 3283-01 634497 core Haloarcula hispanica Haloarcula hispanica ATCC 33960 634498 core Methanobrevibacter ruminantium Methanobrevibacter ruminantium M1 634499 periphery Erwinia pyrifoliae Erwinia pyrifoliae Ep1/96 634500 core Erwinia billingiae Erwinia billingiae Eb661 634503 core Edwardsiella ictaluri Edwardsiella ictaluri 93-146 634504 periphery Bartonella grahamii Bartonella grahamii as4aup 634956 periphery Geobacillus thermoglucosidasius Geobacillus thermoglucosidasius C56-YS93 634994 periphery Leptotrichia hofstadii Leptotrichia hofstadii F0254 635013 core Thermincola potens Thermincola potens JR 637389 core Acidithiobacillus caldus Acidithiobacillus caldus ATCC 51756 637616 core Methylophaga thiooxydans Methylophaga thiooxydans DMS010 637905 periphery Shewanella violacea Shewanella violacea DSS12 637910 core Citrobacter rodentium Citrobacter rodentium ICC168 637911 periphery Actinobacillus minor NM305 Actinobacillus minor NM305 638300 core Cardiobacterium hominis Cardiobacterium hominis ATCC 15826 638301 core Granulicatella adiacens Granulicatella adiacens ATCC 49175 638302 core Selenomonas flueggei Selenomonas flueggei ATCC 43531 638303 core Thermocrinis albus Thermocrinis albus DSM 14484 639282 core Deferribacter desulfuricans Deferribacter desulfuricans SSM1 639283 core Starkeya novella Starkeya novella DSM 506 640081 core Dechlorosoma suillum Dechlorosoma suillum PS 640132 periphery Segniliparus rotundus Segniliparus rotundus DSM 44985 640510 periphery Burkholderia sp. CCGE1001 Burkholderia sp. CCGE1001 640511 periphery Burkholderia sp. CCGE1002 Burkholderia sp. CCGE1002 640512 periphery Burkholderia sp. CCGE1003 Burkholderia sp. CCGE1003 640513 periphery Enterobacter asburiae Enterobacter asburiae LF7a 641112 periphery Ruminococcus flavefaciens Ruminococcus flavefaciens FD-1 641118 periphery Ochrobactrum intermedium Ochrobactrum intermedium LMG 3301 641146 core Scardovia inopinata Scardovia inopinata F0304 641147 core Simonsiella muelleri Simonsiella muelleri ATCC 29453 641149 periphery Neisseria sp. F0314 Neisseria sp. oral taxon 014 str. F0314 641491 periphery Desulfovibrio desulfuricans ND132 Desulfovibrio desulfuricans ND132 641892 periphery Sulcia muelleri DMIN Candidatus Sulcia muelleri DMIN 642492 core Clostridium lentocellum Clostridium lentocellum DSM 5427 643562 periphery Desulfovibrio aespoeensis Desulfovibrio aespoeensis Aspo-2 643648 core Syntrophothermus lipocalidus Syntrophothermus lipocalidus DSM 12680 643867 core Marivirga tractuosa Marivirga tractuosa DSM 4126 644076 periphery Silicibacter sp. TrichCH4B Silicibacter sp. TrichCH4B 644107 periphery Silicibacter lacuscaerulensis Silicibacter lacuscaerulensis ITI-1157 644223 core Komagataella pastoris Komagataella pastoris GS115 644281 periphery Methanocaldococcus sp. FS40622 Methanocaldococcus sp. FS406-22 644282 core Desulfarculus baarsii Desulfarculus baarsii DSM 2075 644283 periphery Micromonospora aurantiaca Micromonospora aurantiaca ATCC 27029 644284 core Arcanobacterium haemolyticum Arcanobacterium haemolyticum DSM 20595 644295 core Methanohalobium evestigatum Methanohalobium evestigatum Z-7303 644548 periphery Gordonia neofelifaecis Gordonia neofelifaecis NRRL B-59395 644966 periphery Thermaerobacter marianensis Thermaerobacter marianensis DSM 12885 644968 periphery Desulfovibrio sp. FW1012B Desulfovibrio sp. FW1012B 645127 periphery Corynebacterium kroppenstedtii Corynebacterium kroppenstedtii DSM 44385 645465 periphery Streptomyces sp. e14 Streptomyces sp. e14 645512 core Jonquetella anthropi Jonquetella anthropi E3_33 E1 645991 core Syntrophobotulus glycolicus Syntrophobotulus glycolicus DSM 8271 647113 core Methanothermococcus okinawensis Methanothermococcus okinawensis IH1 648757 core Rhodomicrobium vannielii Rhodomicrobium vannielii ATCC 17100 648996 core Thermovibrio ammonificans Thermovibrio ammonificans HB-1 649349 core Leadbetterella byssophila Leadbetterella byssophila DSM 17132 649638 core Truepera radiovictrix Truepera radiovictrix DSM 17093 649639 periphery Bacillus cellulosilyticus Bacillus cellulosilyticus DSM 2522 649743 periphery Actinomyces sp. 848 Actinomyces sp. oral taxon 848 str. F0332 649754 periphery Corynebacterium ammoniagenes Corynebacterium ammoniagenes DSM 20306 649761 periphery Prevotella veroralis Prevotella veroralis F0319 649764 periphery Slackia exigua Slackia exigua ATCC 700122 650150 core Erysipelothrix rhusiopathiae Erysipelothrix rhusiopathiae str. Fujisawa 652103 core Rhodopseudomonas palustris DX1 Rhodopseudomonas palustris DX-1 653045 periphery Streptomyces violaceusniger Streptomyces violaceusniger Tu 4113 653733 core Desulfurispirillum indicum Desulfurispirillum indicum S5 653948 core Albugo laibachii Albugo laibachii 655811 periphery Anaerococcus vaginalis Anaerococcus vaginalis ATCC 51170 655812 periphery Aerococcus viridans Aerococcus viridans ATCC 11563 655813 periphery Streptococcus oralis ATCC35037 Streptococcus oralis ATCC 35037 655815 core Zunongwangia profunda Zunongwangia profunda SM-A87 656024 periphery Frankia sp. Daglo Frankia symbiont of Datisca glomerata 656519 periphery Halanaerobium hydrogeniformans Halanaerobium hydrogeniformans 657309 periphery Bacteroides xylanisolvens Bacteroides xylanisolvens XB1A 657313 periphery Ruminococcus torques L214 Ruminococcus torques L2-14 657314 periphery Ruminococcus obeum A2162 Ruminococcus obeum A2-162 657318 periphery Eubacterium rectale Eubacterium rectale DSM 17629 657319 periphery Eubacterium siraeum Eubacterium siraeum 70/3 657321 periphery Ruminococcus bromii Ruminococcus bromii L2-63 657322 periphery Faecalibacterium prausnitzii SL33 Faecalibacterium prausnitzii SL3/3 657323 periphery Ruminococcus sp. SR15 Ruminococcus sp. SR1/5 657324 periphery Butyrivibrio fibrisolvens Butyrivibrio fibrisolvens 16/4 658086 periphery Lachnospiraceae bacterium 3157FAACT1 Lachnospiraceae bacterium 3_1_57FAA_CT1 658088 periphery Lachnospiraceae bacterium 9143BFAA Lachnospiraceae bacterium 9_1_43BFAA 658172 periphery Liberibacter solanacearum Candidatus Liberibacter solanacearum CLso-ZC1 658187 core Legionella drancourtii Legionella drancourtii LLAP12 658655 periphery Lachnospiraceae bacterium 1456FAA Lachnospiraceae bacterium 1_4_56FAA 658659 periphery Erysipelotrichaceae bacterium 3153 Erysipelotrichaceae bacterium 3_1_53 660470 core Mesotoga prima Mesotoga prima MesG1.Ag.4.2 661367 periphery Legionella longbeachae Legionella longbeachae NSW150 662755 periphery Corynebacterium resistens Corynebacterium resistens DSM 45100 663202 periphery Trichophyton verrucosum Trichophyton verrucosum HKI 0517 663278 core Ethanoligenens harbinense Ethanoligenens harbinense YUAN-3 663321 core Regiella insecticola Candidatus Regiella insecticola LSR1 663331 periphery Arthroderma benhamiae Arthroderma benhamiae CBS 112371 663952 periphery Streptococcus dysgalactiae Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957 665029 periphery Erwinia amylovora Erwinia amylovora CFBP1430 665571 periphery Spirochaeta thermophila Spirochaeta thermophila DSM 6192 665959 periphery Bacillus sp. 2A57CT2 Bacillus sp. 2_A_57_CT2 666510 core Acidilobus saccharovorans Acidilobus saccharovorans 345-15 666681 core Methylotenera versatilis Methylotenera versatilis 301 666684 core Afipia sp. 1NLS2 Afipia sp. 1NLS2 667014 core Thermodesulfatator indicus Thermodesulfatator indicus DSM 15286 667015 periphery Bacteroides salanitronis Bacteroides salanitronis DSM 18170 667128 core Pasteurella dagmatis Pasteurella dagmatis ATCC 43325 667129 periphery Serratia odorifera DSM4582 Serratia odorifera DSM 4582 669262 core Mannheimia haemolytica Mannheimia haemolytica serotype A2 str. BOVINE 670487 core Oceanithermus profundus Oceanithermus profundus DSM 14977 674977 periphery Vibrio alginolyticus Vibrio alginolyticus 40B 675635 core Pseudonocardia dioxanivorans Pseudonocardia dioxanivorans CB1190 675806 periphery Vibrio mimicus Vibrio mimicus MB451 675812 periphery Grimontia hollisae Grimontia hollisae CIP 101886 675813 periphery Vibrio metschnikovii Vibrio metschnikovii CIP 69.14 675814 periphery Vibrio coralliilyticus Vibrio coralliilyticus ATCC BAA-450 675815 periphery Vibrio sp. RC586 Vibrio sp. RC586 675816 periphery Vibrio orientalis Vibrio orientalis CIP 102891 = ATCC 33934 675817 core Photobacterium damselae Photobacterium damselae subsp. damselae CIP 102761 676032 periphery Francisella novicida Francisella cf. novicida 3523 679189 periphery Prevotella timonensis Prevotella timonensis CRIS 5C-B1 679190 periphery Prevotella buccalis Prevotella buccalis ATCC 35310 679191 core Prevotella amnii Prevotella amnii CRIS 21A-A 679192 core Bulleidia extructa Bulleidia extructa W1219 679197 core Segniliparus rugosus Segniliparus rugosus ATCC BAA-974 679897 core Helicobacter mustelae Helicobacter mustelae 12198 679901 core Methanosalsum zhilinae Methanosalsum zhilinae DSM 4017 679926 core Methanoplanus petrolearius Methanoplanus petrolearius DSM 11571 679937 periphery Bacteroides coprosuis Bacteroides coprosuis DSM 18011 680198 periphery Streptomyces scabiei Streptomyces scabiei 87.22 680646 periphery Rothia mucilaginosa Rothia mucilaginosa DY-18 682634 periphery Serratia odorifera 4Rx13 Serratia odorifera 4Rx13 682795 periphery Granulicella mallensis Granulicella mallensis MP5ACTX8 683083 periphery Campylobacter jejuni 414 Campylobacter jejuni subsp. jejuni 414 684719 periphery alpha proteobacterium HIMB114 alpha proteobacterium HIMB114 685035 core Citromicrobium bathyomarinum Citromicrobium bathyomarinum JL354 685727 core Rhodococcus equi Rhodococcus equi 103S 688245 core Comamonas testosteroni CNB2 Comamonas testosteroni CNB-2 688246 periphery Prevotella multisaccharivorax Prevotella multisaccharivorax DSM 17128 688269 periphery Thermotoga thermarum Thermotoga thermarum DSM 5069 688270 periphery Cellulophaga algicola Cellulophaga algicola DSM 14237 690566 periphery Sphingobium chlorophenolicum Sphingobium chlorophenolicum L-1 690850 periphery Desulfovibrio africanus Desulfovibrio africanus str. Walvis Bay 693661 periphery Archaeoglobus veneficus Archaeoglobus veneficus SNP6 693746 core Oscillibacter valericigenes Oscillibacter valericigenes Sjm18-20 693977 core Deinococcus proteolyticus Deinococcus proteolyticus MRP 693979 periphery Bacteroides helcogenes Bacteroides helcogenes P 36-108 694427 core Paludibacter propionicigenes Paludibacter propionicigenes WB4 694429 core Pyrolobus fumarii Pyrolobus fumarii 1A 694569 core Aggregatibacter actinomycetemcomitans Aggregatibacter actinomycetemcomitans D7S-1 696125 periphery Bartonella clarridgeiae Bartonella clarridgeiae 73 696127 core Midichloria mitochondrii Candidatus Midichloria mitochondrii IricVA 696369 periphery Desulfotomaculum nigrificans Desulfotomaculum nigrificans DSM 574 696747 periphery Arthrospira platensis Arthrospira platensis NIES-39 697281 core Mahella australiensis Mahella australiensis 50-1 BON 697282 core Methylobacter tundripaludum Methylobacter tundripaludum SV96 697303 periphery Thermoanaerobacter wiegelii Thermoanaerobacter wiegelii Rt8.B1 697329 periphery Ruminococcus albus 7 Ruminococcus albus 7 698737 periphery Staphylococcus lugdunensis Staphylococcus lugdunensis HKU09-01 698757 periphery Pyrobaculum oguniense Pyrobaculum oguniense TE7 698964 periphery Corynebacterium diphtheriae Corynebacterium diphtheriae PW8 699184 periphery Bacillus cereus SJ1 Bacillus cereus SJ1 699218 periphery Megasphaera sp. 28L Megasphaera genomosp. type_1 str. 28L 699246 periphery Clostridiales sp. BVAB3 Clostridiales genomosp. BVAB3 str. UPII9-5 700015 core Coriobacterium glomerans Coriobacterium glomerans PW2 700598 core Niastella koreensis Niastella koreensis GR20-10 701176 periphery Vibrio sp. N418 Vibrio sp. N418 701347 periphery Enterobacter cloacae SCF1 Enterobacter cloacae SCF1 701521 periphery Pediococcus claussenii Pediococcus claussenii ATCC BAA-344 702113 core Novosphingobium sp. PP1Y Novosphingobium sp. PP1Y 702438 periphery Prevotella oulorum Prevotella oulorum F0390 702450 core Turicibacter sanguinis Turicibacter sanguinis PC909 702453 core Listeria seeligeri Listeria seeligeri FSL N1-067 706191 periphery Pantoea ananatis Pantoea ananatis LMG 20103 706194 periphery Sulcia muelleri CARI Candidatus Sulcia muelleri CARI 706433 core Solobacterium moorei Solobacterium moorei F0204 706434 periphery Megasphaera micronuciformis Megasphaera micronuciformis F0359 706436 periphery Capnocytophaga sp. 329 Capnocytophaga sp. oral taxon 329 str. F0087 706437 periphery Streptococcus anginosus F0211 Streptococcus anginosus F0211 708248 periphery Mycoplasma suis Mycoplasma suis KI3806 708616 periphery Mycoplasma gallisepticum Mycoplasma gallisepticum str. F 709032 core Sulfuricurvum kujiense Sulfuricurvum kujiense DSM 16994 709797 periphery Bradyrhizobiaceae bacterium Bradyrhizobiaceae bacterium SG-6C 709986 periphery Deinococcus maricopensis Deinococcus maricopensis DSM 21211 709991 core Odoribacter splanchnicus Odoribacter splanchnicus DSM 20712 710393 periphery Helicobacter suis Helicobacter suis HS1 710685 periphery Mycobacterium rhodesiae Mycobacterium rhodesiae NBB3 710696 core Intrasporangium calvum Intrasporangium calvum DSM 43043 712898 periphery Pantoea vagans Pantoea vagans C9-1 712938 periphery Lactobacillus fermentum Lactobacillus fermentum CECT 5716 713605 periphery Lactobacillus iners Lactobacillus iners AB-1 713887 periphery cyanobacterium UCYNA cyanobacterium UCYN-A 714313 periphery Lactobacillus sanfranciscensis Lactobacillus sanfranciscensis TMW 1.1304 714943 core Mucilaginibacter paludis Mucilaginibacter paludis DSM 18603 714961 core Lysinibacillus fusiformis Lysinibacillus fusiformis ZC1 714995 periphery Gluconacetobacter hansenii Gluconacetobacter hansenii ATCC 23769 715225 periphery Paenibacillus vortex Paenibacillus vortex V453 715226 periphery Asticcacaulis biprosthecum Asticcacaulis biprosthecum C19 715451 periphery Alteromonas sp. SN2 Alteromonas sp. SN2 716541 periphery Enterobacter cloacae ATCC13047 Enterobacter cloacae subsp. cloacae ATCC 13047 716544 core Waddlia chondrophila Waddlia chondrophila WSU 86-1044 717231 core Flexistipes sinusarabici Flexistipes sinusarabici DSM 4947 717606 periphery Paenibacillus curdlanolyticus Paenibacillus curdlanolyticus YK9 717608 periphery Clostridium saccharolyticum K10 Clostridium cf. saccharolyticum K10 717773 core Thioalkalimicrobium cyclicum Thioalkalimicrobium cyclicum ALM1 717774 periphery Marinomonas mediterranea Marinomonas mediterranea MMB-1 717785 core Hyphomicrobium sp. MC1 Hyphomicrobium sp. MC1 717959 periphery Alistipes shahii Alistipes shahii WAL 8301 717960 periphery Eubacterium cylindroides Eubacterium cylindroides T2-87 717962 core Coprococcus catus Coprococcus catus GD/7 718252 core Faecalibacterium prausnitzii L26 Faecalibacterium prausnitzii L2-6 718254 periphery Enterobacter cloacae NCTC9394 Enterobacter cloacae subsp. cloacae NCTC 9394 718255 periphery Roseburia intestinalis Roseburia intestinalis XB6B4 720554 periphery Clostridium clariflavum Clostridium clariflavum DSM 19732 720555 periphery Bacillus atrophaeus Bacillus atrophaeus 1942 722419 periphery Pseudoalteromonas haloplanktis ANT505 Pseudoalteromonas haloplanktis ANT/505 722438 periphery Mycoplasma pneumoniae Mycoplasma pneumoniae FH 741091 periphery Rahnella sp. Y9602 Rahnella sp. Y9602 742159 periphery Achromobacter piechaudii Achromobacter piechaudii ATCC 43553 742723 periphery Lachnospiraceae bacterium 2146FAA Lachnospiraceae bacterium 2_1_46FAA 742740 periphery Clostridium symbiosum Clostridium symbiosum WAL-14163 742766 periphery Dysgonomonas gadei Dysgonomonas gadei ATCC BAA-286 742767 core Dysgonomonas mossii Dysgonomonas mossii DSM 22836 742821 core Sutterella wadsworthensis Sutterella wadsworthensis 3_1_45B 743299 periphery Acidithiobacillus ferrivorans Acidithiobacillus ferrivorans SS3 743525 periphery Thermus scotoductus Thermus scotoductus SA-01 743718 core Isoptericola variabilis Isoptericola variabilis 225 743720 periphery Pseudomonas fulva Pseudomonas fulva 12-X 743721 core Pseudoxanthomonas suwonensis Pseudoxanthomonas suwonensis 11-1 743722 core Sphingobacterium sp. 21 Sphingobacterium sp. 21 743965 periphery Mycoplasma putrefaciens Mycoplasma putrefaciens KS1 744872 periphery Spirochaeta caldaria Spirochaeta caldaria DSM 7334 744979 core Ahrensia sp. R2A130 Ahrensia sp. R2A130 744980 core Roseibium sp. TrichSKD4 Roseibium sp. TrichSKD4 745277 core Rahnella aquatilis Rahnella aquatilis CIP 78.65 = ATCC 33071 746360 periphery Pseudomonas fluorescens WH6 Pseudomonas fluorescens WH6 747365 core Thermodesulfobium narugense Thermodesulfobium narugense DSM 14796 747682 periphery Mycoplasma alligatoris Mycoplasma alligatoris A21JP2 748224 periphery Faecalibacterium prausnitzii KLE1255 Faecalibacterium cf. prausnitzii KLE1255 748671 periphery Lactobacillus crispatus Lactobacillus crispatus ST1 748727 periphery Clostridium ljungdahlii Clostridium ljungdahlii DSM 13528 749222 core Nitratifractor salsuginis Nitratifractor salsuginis DSM 16511 749414 periphery Streptomyces bingchenggensis Streptomyces bingchenggensis BCW-1 749927 core Amycolatopsis mediterranei Amycolatopsis mediterranei U32 751586 periphery Brevundimonas diminuta Brevundimonas diminuta ATCC 11568 752555 periphery Prevotella bryantii Prevotella bryantii B14 754027 periphery Treponema phagedenis Treponema phagedenis F0421 754252 periphery Propionibacterium freudenreichii Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 755731 periphery Clostridium sp. BNL1100 Clostridium sp. BNL1100 755732 core Fluviicola taffensis Fluviicola taffensis DSM 16823 756067 core Microcoleus vaginatus Microcoleus vaginatus FGP-2 756272 periphery Planctomyces brasiliensis Planctomyces brasiliensis DSM 5305 756883 periphery halophilic archaeon DL31 halophilic archaeon DL31 757424 core Herbaspirillum seropedicae Herbaspirillum seropedicae SmR1 759362 core Ketogulonigenium vulgarum Ketogulonigenium vulgarum WSH-001 759914 periphery Brachyspira pilosicoli Brachyspira pilosicoli 95/1000 760011 periphery Spirochaeta coccoides Spirochaeta coccoides DSM 17374 760142 core Hippea maritima Hippea maritima DSM 10411 760192 core Haliscomenobacter hydrossis Haliscomenobacter hydrossis DSM 1100 760568 core Desulfotomaculum kuznetsovii Desulfotomaculum kuznetsovii DSM 6115 761193 core Runella slithyformis Runella slithyformis DSM 19594 762051 periphery Leuconostoc kimchii Leuconostoc kimchii IMSNU 11154 762376 periphery Achromobacter xylosoxidans A8 Achromobacter xylosoxidans A8 762550 periphery Leuconostoc gasicomitatum Leuconostoc gasicomitatum LMG 18811 762903 periphery Pedobacter saltans Pedobacter saltans DSM 12145 762948 core Rothia dentocariosa Rothia dentocariosa ATCC 17931 762963 periphery Actinomyces sp. 170 Actinomyces sp. oral taxon 170 str. F0386 762982 core Paraprevotella xylaniphila Paraprevotella xylaniphila YIT 11841 762983 core Succinatimonas hippei Succinatimonas hippei YIT 12066 762984 periphery Bacteroides clarus Bacteroides clarus YIT 12056 763034 periphery Bacteroides fluxus Bacteroides fluxus YIT 12057 764291 periphery Streptococcus urinalis Streptococcus urinalis 2285-97 764298 periphery Streptococcus macacae Streptococcus macacae NCTC 11558 764299 periphery Streptococcus ictaluri Streptococcus ictaluri 707-05 765123 periphery Propionibacterium acnes HL037PA2 Propionibacterium acnes HL037PA2 765177 periphery Desulfurococcus mucosus Desulfurococcus mucosus DSM 2162 765420 core Oscillochloris trichoides Oscillochloris trichoides DG-6 765698 periphery Mesorhizobium ciceri Mesorhizobium ciceri biovar biserrulae WSM1271 765910 core Marichromatium purpuratum Marichromatium purpuratum 984 765952 core Parachlamydia acanthamoebae Parachlamydia acanthamoebae UV-7 767031 periphery Prevotella denticola Prevotella denticola F0289 767100 periphery Parvimonas sp. F0139 Parvimonas sp. oral taxon 110 str. F0139 768066 periphery Halomonas elongata Halomonas elongata DSM 2581 768670 core Calditerrivibrio nitroreducens Calditerrivibrio nitroreducens DSM 19672 768679 core Thermoproteus tenax Thermoproteus tenax Kra 1 768706 core Desulfosporosinus orientis Desulfosporosinus orientis DSM 765 768726 periphery Streptococcus mitis F0392 Streptococcus mitis bv. 2 str. F0392 771870 core Sordaria macrospora Sordaria macrospora k hell 795359 core Thermodesulfobacterium sp. OPB45 Thermodesulfobacterium sp. OPB45 795797 core Halalkalicoccus jeotgali Halalkalicoccus jeotgali B3 796620 periphery Vibrio caribbenthicus Vibrio caribbenthicus ATCC BAA-2122 797209 core Haladaptatus paucihalophilus Haladaptatus paucihalophilus DX253 797210 core Halopiger xanaduensis Halopiger xanaduensis SH-6 856793 core Micavibrio aeruginosavorus Micavibrio aeruginosavorus ARL-13 857087 core Methylomonas methanica Methylomonas methanica MC09 857571 periphery Moraxella catarrhalis Moraxella catarrhalis O35E 858215 periphery Thermoanaerobact. xylanolyticum Thermoanaerobacterium xylanolyticum LX-11 858619 periphery Corynebacterium variabile Corynebacterium variabile DSM 44702 859194 periphery Mycoplasma haemofelis Mycoplasma haemofelis Ohio2 859654 core Blochmannia vafer Candidatus Blochmannia vafer str. BVAF 860228 periphery Capnocytophaga canimorsus Capnocytophaga canimorsus Cc5 861208 periphery Agrobacterium sp. H133 Agrobacterium sp. H13-3 861360 periphery Arthrobacter arilaitensis Arthrobacter arilaitensis Re117 861557 periphery Pyrenophora teres Pyrenophora teres f. teres 0 1 862514 periphery Pediococcus acidilactici Pediococcus acidilactici DSM 20284 862515 periphery Prevotella marshii Prevotella marshii DSM 16973 862517 periphery Peptoniphilus duerdenii Peptoniphilus duerdenii ATCC BAA-1640 862719 periphery Azospirillum lipoferum Azospirillum lipoferum 4B 862751 periphery Streptomyces sp. SirexAAE Streptomyces sp. SirexAA-E 862908 core Bacteriovorax marinus Bacteriovorax marinus SJ 862965 periphery Haemophilus parainfluenzae Haemophilus parainfluenzae T3T1 864563 periphery Selenomonas sp. 67H29BP Selenomonas sp. oral taxon 149 str. 67H29BP 864564 core Parascardovia denticolens Parascardovia denticolens DSM 10105 = JCM 12538 864565 periphery Eubacterium yurii Eubacterium yurii subsp. margaretiae ATCC 43715 864567 periphery Streptococcus mitis ATCC6249 Streptococcus mitis ATCC 6249 864570 periphery Streptococcus sp. 73H25AP Streptococcus sp. oral taxon 071 str. 73H25AP 865938 core Weeksella virosa Weeksella virosa DSM 16922 866771 periphery Prevotella disiens Prevotella disiens FB035-09AN 866774 core Atopobium vaginae PB189T14 Atopobium vaginae PB189-T1-4 866775 core Aerococcus urinae Aerococcus urinae ACS-120-V-Col10a 866776 core Veillonella atypica Veillonella atypica ACS-049-V-Sch6 867900 core Cellulophaga lytica Cellulophaga lytica DSM 7489 867903 core Thermaerobacter subterraneus Thermaerobacter subterraneus DSM 13965 868131 periphery Methanobacterium sp. SWAN1 Methanobacterium sp. SWAN-1 868132 core Methanobacterium sp. AL21 Methanobacterium sp. AL-21 868864 core Desulfurobacterium thermolithotrophum Desulfurobacterium thermolithotrophum DSM 11699 869209 periphery Treponema succinifaciens Treponema succinifaciens DSM 2489 869210 core Marinithermus hydrothermalis Marinithermus hydrothermalis DSM 14884 871237 periphery Streptococcus infantis SK1302 Streptococcus infantis SK1302 871271 core Zinderia insecticola Candidatus Zinderia insecticola CARI 871585 periphery Acinetobacter calcoaceticus Acinetobacter calcoaceticus PHEA-2 873447 periphery Streptococcus parauberis Streptococcus parauberis NCFD 2020 873448 periphery Streptococcus porcinus Streptococcus porcinus str. Jelinkova 176 873449 periphery Streptococcus criceti Streptococcus criceti HS-6 873517 core Capnocytophaga ochracea F0287 Capnocytophaga ochracea F0287 873533 periphery Prevotella oralis Prevotella oralis ATCC 33269 875328 core Mycobacterium sp. JDM601 Mycobacterium sp. JDM601 876044 periphery gamma proteobacterium IMCC3088 gamma proteobacterium IMCC3088 876142 periphery Encephalitozoon intestinalis Encephalitozoon intestinalis ATCC 50506 878320 periphery Aeromonas caviae Aeromonas caviae Ae398 879243 periphery Porphyromonas asaccharolytica Porphyromonas asaccharolytica DSM 20707 879305 core Anaerococcus prevotii ACS065VCol13 Anaerococcus prevotii ACS-065-V-Col13 879308 periphery Peptoniphilus sp. F0436 Peptoniphilus sp. oral taxon 375 str. F0436 879309 periphery Veillonella sp. F0412 Veillonella sp. oral taxon 158 str. F0412 879310 periphery Selenomonas sp F0430 Selenomonas sp. oral taxon 137 str. F0430 880070 core Cyclobacterium marinum Cyclobacterium marinum DSM 745 880072 core Desulfobacca acetoxidans Desulfobacca acetoxidans DSM 11109 880447 periphery Mycoplasma leachii Mycoplasma leachii PG50 880724 core Methanotorris igneus Methanotorris igneus Kol 5 881621 periphery Listeria ivanovii Listeria ivanovii subsp. ivanovii PAM 55 882102 periphery Vibrio anguillarum Vibrio anguillarum 775 882378 periphery Burkholderia rhizoxinica Burkholderia rhizoxinica HKI 454 882884 core Salmonella enterica RSK2980 Salmonella enterica subsp. arizonae serovar str. RSK2980 886377 core Muricauda ruestringensis Muricauda ruestringensis DSM 13258 886738 periphery Nitrosoarchaeum limnia Candidatus Nitrosoarchaeum limnia SFB1 886872 periphery Leuconostoc argentinum Leuconostoc argentinum KCTC 3773 886882 periphery Paenibacillus polymyxa SC2 Paenibacillus polymyxa SC2 887062 core Hylemonella gracilis Hylemonella gracilis ATCC 19624 887324 periphery Actinobacillus ureae Actinobacillus ureae ATCC 25976 887325 core Eubacterium saburreum Eubacterium saburreum DSM 3986 887327 core Kingella kingae Kingella kingae ATCC 23330 887898 core Lautropia mirabilis Lautropia mirabilis ATCC 51599 887929 core Pseudoramibacter alactolyticus Pseudoramibacter alactolyticus ATCC 23263 888048 periphery Streptococcus parasanguinis Streptococcus parasanguinis ATCC 903 888049 periphery Streptococcus sanguinis ATCC49296 Streptococcus sanguinis ATCC 49296 888052 periphery Actinomyces sp. 180 Actinomyces sp. oral taxon 180 str. F0310 888056 core Actinomyces sp. 448 Actinomyces sp. oral taxon 448 str. F0400 888057 periphery Aggregatibacter segnis Aggregatibacter segnis ATCC 33393 888059 periphery Capnocytophaga sp. 338 Capnocytophaga sp. oral taxon 338 str. F0234 888060 core Centipeda periodontii Centipeda periodontii DSM 2778 888064 periphery Enterococcus italicus Enterococcus italicus DSM 15952 888741 periphery Kingella denitrificans Kingella denitrificans ATCC 33394 888742 periphery Neisseria bacilliformis Neisseria bacilliformis ATCC BAA-1200 888743 periphery Prevotella multiformis Prevotella multiformis DSM 16608 888746 core Streptococcus peroris Streptococcus peroris ATCC 700780 888832 periphery Prevotella salivae Prevotella salivae DSM 15606 888833 periphery Streptococcus australis Streptococcus australis ATCC 700641 889201 periphery Streptococcus cristatus Streptococcus cristatus ATCC 51100 889513 periphery Corynebacterium pseudotuberculosis Corynebacterium pseudotuberculosis I19 891391 periphery Lactobacillus acidophilus 30SC Lactobacillus acidophilus 30SC 891974 periphery Plautia stali Plautia stali symbiont 903503 core Moranella endobia Candidatus Moranella endobia PCIT 903510 periphery Vibrio furnissii Vibrio furnissii NCTC 11218 903814 periphery Eubacterium limosum Eubacterium limosum KIST612 904293 periphery Streptococcus downei Streptococcus downei F0415 904294 periphery Streptococcus sp. F0418 Streptococcus sp. oral taxon 056 str. F0418 904296 periphery Oribacterium sp. F0425 Oribacterium sp. oral taxon 108 str. F0425 904306 periphery Streptococcus vestibularis Streptococcus vestibularis F0396 906968 periphery Treponema brennaborense Treponema brennaborense DSM 12168 907239 periphery Helicobacter pylori SouthAfrica7 Helicobacter pylori SouthAfrica7 907931 core Leuconostoc fallax Leuconostoc fallax KCTC 3537 907965 periphery Encephalitozoon hellem Encephalitozoon hellem ATCC 50504 908337 core Eremococcus coleocola Eremococcus coleocola ACS-139-V-Col8 908338 core Peptoniphilus harei Peptoniphilus harei ACS-146-V-Sch2b 908340 periphery Clostridium sp. HGF2 Clostridium sp. HGF2 908612 core Alistipes sp. HGB5 Alistipes sp. HGB5 908937 periphery Prevotella dentalis Prevotella dentalis DSM 3688 910313 periphery Streptococcus pseudoporcinus Streptococcus pseudoporcinus SPIN 20026 910314 periphery Dialister microaerophilus Dialister microaerophilus UPII 345-E 911045 core Pseudovibrio sp. FOBEG1 Pseudovibrio sp. FO-BEG1 911104 periphery Weissella cibaria Weissella cibaria KACC 11862 913848 periphery Lactobacillus coryniformis Lactobacillus coryniformis subsp. coryniformis KCTC 3167 926562 periphery Owenweeksia hongkongensis Owenweeksia hongkongensis DSM 17368 926569 core Anaerolinea thermophila Anaerolinea thermophila UNI-1 927666 periphery Streptococcus oralis Uo5 Streptococcus oralis Uo5 927691 periphery Leuconostoc gelidum Leuconostoc gelidum KCTC 3527 929439 periphery Leishmania mexicana Leishmania mexicana MHOM GT 2001 U1103 929506 periphery Clostridium botulinum BKT015925 Clostridium botulinum BKT015925 930171 periphery Arthrobacter phenanthrenivorans Arthrobacter phenanthrenivorans Sphe3 930942 periphery Lactobacillus animalis Lactobacillus animalis KCTC 3501 930945 core Sulfolobus islandicus Sulfolobus islandicus REY15A 930946 core Fructobacillus fructosus Fructobacillus fructosus KCTC 3544 931626 core Acetobacterium woodii Acetobacterium woodii DSM 1030 931890 periphery Eremothecium cymbalariae Eremothecium cymbalariae DBVPG_7215 933115 core Planococcus donghaensis Planococcus donghaensis MPA1U2 933801 core Acidianus hospitalis Acidianus hospitalis W1 936140 periphery Lactobacillus farciminis Lactobacillus farciminis KCTC 3681 936155 periphery Helicobacter felis Helicobacter felis ATCC 49179 937774 core Taylorella equigenitalis Taylorella equigenitalis MCE9 940190 core Melissococcus plutonius Melissococcus plutonius ATCC 35311 940615 core Granulicella tundricola Granulicella tundricola 941770 core Lactobacillus fructivorans Lactobacillus fructivorans KCTC 3543 944547 periphery Arcobacter sp. L Arcobacter sp. L 944559 periphery Paenibacillus sp. HGF7 Paenibacillus sp. HGF7 944560 periphery Actinomyces sp. 175 Actinomyces sp. oral taxon 175 str. F0384 944562 periphery Lactobacillus oris Lactobacillus oris F0423 944564 periphery Veillonella sp. F0422 Veillonella sp. oral taxon 780 str. F0422 944565 periphery Parvimonas sp. F0440 Parvimonas sp. oral taxon 393 str. F0440 945021 core Tetragenococcus halophilus Tetragenococcus halophilus NBRC 12172 945543 periphery Vibrio brasiliensis Vibrio brasiliensis LMG 20546 945550 periphery Vibrio sinaloensis Vibrio sinaloensis DSM 21326 945681 periphery Acetobacter pomorum Acetobacter pomorum DM001 945712 periphery Corynebacterium ulcerans Corynebacterium ulcerans BR-AD22 977880 periphery Cupriavidus taiwanensis Cupriavidus taiwanensis LMG 19424 979556 core Microbacterium testaceum Microbacterium testaceum StLB037 981222 core Chloracidobacterium thermophilum Candidatus Chloracidobacterium thermophilum B 981383 core Ornithinibacillus scapharcae Ornithinibacillus scapharcae TW25 983328 periphery Campylobacter fetus Campylobacter fetus subsp. venerealis NCTC 10354 983544 core Lacinutrix sp. 5H374 Lacinutrix sp. 5H-3-7-4 983545 periphery Glaciecola sp. 4H37YE5 Glaciecola sp. 4H-3-7+YE-5 983548 core Krokinobacter sp. 4H375 Krokinobacter sp. 4H-3-7-5 983920 periphery Novosphingobium nitrogenifigens Novosphingobium nitrogenifigens DSM 19370 984892 periphery Staphylococcus pseudintermedius Staphylococcus pseudintermedius ED99 985002 periphery Staphylococcus aureus MSHR1132 Staphylococcus aureus subsp. aureus MSHR1132 985053 periphery Vulcanisaeta moutnovskia Vulcanisaeta moutnovskia 768-28 985665 periphery Paenibacillus terrae Paenibacillus terrae HPL-003 985867 core Odyssella thessalonicensis Candidatus Odyssella thessalonicensis L13 986075 core Caldalkalibacillus thermarum Caldalkalibacillus thermarum TA2.A1 987059 core Rubrivivax benzoatilyticus Rubrivivax benzoatilyticus JA2 990316 core Methanosaeta concilii Methanosaeta concilii GP6 991905 periphery Polymorphum gilvum Polymorphum gilvum SL003B-26A1 992406 core Riemerella anatipestifer Riemerella anatipestifer RA-GD 996637 core Streptomyces griseoaurantiacus Streptomyces griseoaurantiacus M045 997346 core Desmospora sp. 8437 Desmospora sp. 8437 997352 periphery Prevotella nigrescens Prevotella nigrescens ATCC 33563 997353 periphery Prevotella pallens Prevotella pallens ATCC 700821 997830 periphery Streptococcus infantis X Streptococcus infantis X 998088 core Aeromonas veronii Aeromonas veronii B565 999141 core Halomonas sp. TD01 Halomonas sp. TD01 999541 periphery Burkholderia gladioli Burkholderia gladioli BSR3 999630 periphery Thermoproteus uzoniensis Thermoproteus uzoniensis 768-20 1000565 core Methyloversatilis universalis Methyloversatilis universalis FAM5 1000569 periphery Megasphaera sp. UPII135E Megasphaera sp. UPII 135-E 1000570 periphery Streptococcus anginosus SK52 Streptococcus anginosus SK52 = DSM 20563 1000588 periphery Streptococcus mitis SK95 Streptococcus mitis bv. 2 str. SK95 1001530 periphery Photobacterium leiognathi Photobacterium leiognathi subsp. mandapamensis svers.1.1. 1001585 periphery Pseudomonas mendocina NK01 Pseudomonas mendocina NK-01 1001994 core Nitrosoarchaeum koreensis Candidatus Nitrosoarchaeum koreensis MY1 1002339 periphery Psychrobacter sp. 1501 Psychrobacter sp. 1501(2011) 1002672 periphery Pelagibacter sp. IMCC9063 Candidatus Pelagibacter sp. IMCC9063 1002804 periphery Helicobacter bizzozeronii Helicobacter bizzozeronii CIII-1 1003195 periphery Streptomyces cattleya Streptomyces cattleya NRRL 8057 = DSM 46488 1003200 core Achromobacter xylosoxidans AXXA Achromobacter xylosoxidans AXX-A 1004836 core Gluconacetobacter sp. SXCC1 Gluconacetobacter sp. SXCC-1 1005048 core Collimonas fungivorans Collimonas fungivorans Ter331 1005057 periphery Buchnera aphidicola Ua Buchnera aphidicola str. Ua (Uroleucon ambrosiae) 1005058 core Gallibacterium anatis Gallibacterium anatis UMN179 1005090 periphery Buchnera aphidicola Ak Buchnera aphidicola str. Ak (Acyrthosiphon kondoi) 1005705 periphery Streptococcus infantis SK1076 Streptococcus infantis SK1076 1006006 core Metallosphaera cuprina Metallosphaera cuprina Ar-4 1006551 core Klebsiella oxytoca Klebsiella oxytoca KCTC 1686 1007104 core Sphingomonas sp. S17 Sphingomonas sp. S17 1007105 core Pusillimonas sp. T77 Pusillimonas sp. T7-7 1008459 periphery Taylorella asinigenitalis Taylorella asinigenitalis MCE3 1009370 core Acetonema longum Acetonema longum DSM 6540 1026882 periphery Methylophaga aminisulfidivorans Methylophaga aminisulfidivorans MP 1027292 core Sporosarcina newyorkensis Sporosarcina newyorkensis 2681 1027371 periphery Gordonia alkanivorans Gordonia alkanivorans NBRC 16433 1027396 periphery Listeria monocytogenes Scott Listeria monocytogenes str. Scott A 1028307 periphery Enterobacter aerogenes Enterobacter aerogenes KCTC 2190 1028803 periphery Haemophilus haemolyticus M19501 Haemophilus haemolyticus M19501 1028805 periphery Haemophilus haemolyticus M21621 Haemophilus haemolyticus M21621 1029718 core Arthromitus sp. SFBmoJap Candidatus Arthromitus sp. SFB-mouse-Japan 1031711 core Ralstonia solanacearum Po82 Ralstonia solanacearum Po82 1032480 core Microlunatus phosphovorus Microlunatus phosphovorus NM-1 1033802 core Salinisphaera shabanensis Salinisphaera shabanensis E1L3A 1033806 periphery Halorhabdus tiamatea Halorhabdus tiamatea SARL4B 1033810 core Haloplasma contractile Haloplasma contractile SSD-17B 1033837 periphery Lactobacillus kefiranofaciens Lactobacillus kefiranofaciens ZW3 1034807 periphery Flavobacterium branchiophilum Flavobacterium branchiophilum FL-15 1034808 periphery Mycoplasma anatis Mycoplasma anatis 1340 1035184 periphery Streptococcus constellatus Streptococcus constellatus subsp. pharyngis SK1060 = CCUG 46377 1035188 periphery Haemophilus pittmaniae Haemophilus pittmaniae HK 85 1035189 periphery Streptococcus infantis SK970 Streptococcus infantis SK970 1036673 periphery Paenibacillus mucilaginosus Paenibacillus mucilaginosus KNP414 1036674 periphery Idiomarina sp. A28L Idiomarina sp. A28L 1037409 periphery Bradyrhizobium japonicum USDA6 Bradyrhizobium japonicum USDA 6 1037410 periphery Mycoplasma columbinum Mycoplasma columbinum SF7 1040964 periphery Lactobacillus ruminis Lactobacillus ruminis SPM0211 1041504 periphery Arthromitus sp. SFBraYit Candidatus Arthromitus sp. SFB-rat-Yit 1041522 periphery Mycobacterium colombiense Mycobacterium colombiense CECT 3035 1041826 periphery Flavobacterium columnare Flavobacterium columnare ATCC 49512 1042156 periphery Clostridium sp. SY8519 Clostridium sp. SY8519 1042163 periphery Brevibacillus laterosporus Brevibacillus laterosporus LMG 15441 1042876 periphery Pseudomonas putida S16 Pseudomonas putida S16 1042877 periphery Thermococcus sp. 4557 Thermococcus sp. 4557 1045854 core Weissella koreensis Weissella koreensis KACC 15510 1045855 periphery Pseudoxanthomonas spadix Pseudoxanthomonas spadix BD-a59 1045856 periphery Enterobacter cloacae EcWSU1 Enterobacter cloacae EcWSU1 1045858 periphery Brachyspira intermedia Brachyspira intermedia PWS/A 1046627 core Bizionia argentinensis Bizionia argentinensis JUB59 1046629 periphery Streptococcus salivarius Streptococcus salivarius 57.I 1047171 core Zymoseptoria tritici Zymoseptoria tritici 1048834 periphery Alicyclobacillus acidocaldarius Tc41 Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 1050720 core Agrobacterium tumefaciens F2 Agrobacterium tumefaciens F2 1051006 periphery Propionibacterium acnes SK182BJCVI Propionibacterium acnes SK182B-JCVI 1051075 periphery Paracoccus denitrificans SD1 Paracoccus denitrificans SD1 1051632 core Sulfobacillus acidophilus Sulfobacillus acidophilus TPY 1051646 periphery Vibrio tubiashii Vibrio tubiashii ATCC 19109 1052684 periphery Paenibacillus polymyxa M1 Paenibacillus polymyxa M1 1053648 core Tremblaya princeps Candidatus Tremblaya princeps PCVAL 1054460 periphery Streptococcus pseudopneumoniae Streptococcus pseudopneumoniae IS7493 1064535 core Megasphaera elsdenii Megasphaera elsdenii DSM 20460 1064539 core Azospirillum brasilense Azospirillum brasilense Sp245 1064592 core Naumovozyma castellii Naumovozyma castellii CBS 4309 1069533 periphery Streptococcus infantarius Streptococcus infantarius subsp. infantarius CJ18 1071378 periphery Naumovozyma dairenensis Naumovozyma dairenensis CBS 421 1071381 core Tetrapisispora phaffii Tetrapisispora phaffii CBS 4417 1074889 periphery Blattabacterium sp. MADAR Blattabacterium sp. (Mastotermes darwiniensis) str. MADAR 1075399 periphery Blattabacterium sp. Cpu Blattabacterium sp. (Cryptocercus punctulatus) str. Cpu 1082931 core Pelagibacterium halotolerans Pelagibacterium halotolerans B2 1085623 periphery Glaciecola nitratireducens Glaciecola nitratireducens FR1064 1097668 core Burkholderia sp. YI23 Burkholderia sp. YI23 1104324 periphery Pyrobaculum sp. 1860 Pyrobaculum sp. 1860 1110509 periphery Methanosaeta harundinacea Methanosaeta harundinacea 6Ac 1111069 periphery Thermus sp. CCBUS3UF1 Thermus sp. CCB_US3_UF1 1111676 periphery Mycoplasma haemocanis Mycoplasma haemocanis str. Illinois 1112204 core Gordonia polyisoprenivorans Gordonia polyisoprenivorans VH2 1114970 periphery Pseudomonas fluorescens F113 Pseudomonas fluorescens F113 1116231 periphery Streptococcus macedonicus Streptococcus macedonicus ACA-DC 198 1116375 periphery Vibrio sp. EJY3 Vibrio sp. EJY3 1117943 periphery Sinorhizobium fredii HH103 Sinorhizobium fredii HH103 1127134 core Nocardia cyriacigeorgica Nocardia cyriacigeorgica GUH-2 1129369 core Mycoplasma hyorhinis Mycoplasma hyorhinis GDL-1 1133850 periphery Streptomyces hygroscopicus Streptomyces hygroscopicus subsp. jinggangensis 5008 1142511 periphery Wigglesworthia glossinidia Gm Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitans (Yale colony)